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Cluster: HRGMv2_4062_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4062_6 HRGMv2_4062_6_22 30303 32198 + CBM48 | GH13_9
pfam HRGMv2_4062_6 HRGMv2_4062_6_23 32230 33432 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_4062_6 HRGMv2_4062_6_24 33433 34545 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_4062_6 HRGMv2_4062_6_25 34585 36060 + GT5
CAZyme HRGMv2_4062_6 HRGMv2_4062_6_26 36076 38496 + GT35
CAZyme HRGMv2_4062_6 HRGMv2_4062_6_27 38501 40297 + GH13_39
TC HRGMv2_4062_6 HRGMv2_4062_6_28 40371 40598 + 3.D.1.6.4
pfam HRGMv2_4062_6 HRGMv2_4062_6_29 40658 41221 - Maf
pfam HRGMv2_4062_6 HRGMv2_4062_6_30 41453 42616 + FtsJ | Cons_hypoth95 | MTS | PrmA | Methyltransf_15 | Methyltrans_SAM | Methyltransf_31 | PUA_3
TC HRGMv2_4062_6 HRGMv2_4062_6_31 42626 43447 + 3.A.1.132.3
Gene ID: HRGMv2_4062_6_22
Type: CAZyme
Location: 30303 - 32198 (+)
Gene ID: HRGMv2_4062_6_23
Type: pfam
Location: 32230 - 33432 (+)
Gene ID: HRGMv2_4062_6_24
Type: pfam
Location: 33433 - 34545 (+)
Gene ID: HRGMv2_4062_6_25
Type: CAZyme
Location: 34585 - 36060 (+)
Gene ID: HRGMv2_4062_6_26
Type: CAZyme
Location: 36076 - 38496 (+)
Gene ID: HRGMv2_4062_6_27
Type: CAZyme
Location: 38501 - 40297 (+)
Gene ID: HRGMv2_4062_6_28
Type: TC
Location: 40371 - 40598 (+)
Gene ID: HRGMv2_4062_6_29
Type: pfam
Location: 40658 - 41221 (-)
Gene ID: HRGMv2_4062_6_30
Type: pfam
Location: 41453 - 42616 (+)
Gene ID: HRGMv2_4062_6_31
Type: TC
Location: 42626 - 43447 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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