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Cluster: HRGMv2_4062_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4062_2 HRGMv2_4062_2_18 26299 28881 + GH43_32
STP HRGMv2_4062_2 HRGMv2_4062_2_19 28897 30393 + SBP_bac_1
TC HRGMv2_4062_2 HRGMv2_4062_2_20 30471 31385 + 3.A.1.1.20
TC HRGMv2_4062_2 HRGMv2_4062_2_21 31390 32235 + 3.A.1.1.34
CAZyme HRGMv2_4062_2 HRGMv2_4062_2_22 32251 34002 + GH2
CAZyme HRGMv2_4062_2 HRGMv2_4062_2_23 34016 35128 + GH5_13
CAZyme HRGMv2_4062_2 HRGMv2_4062_2_24 35147 38830 + GH93
NULL(UNKNOWN) HRGMv2_4062_2 HRGMv2_4062_2_25 38849 38980 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4062_2 HRGMv2_4062_2_26 38988 42677 + SASA | 3keto-disac_hyd | Flg_new | Flg_new_2 | Flg_new_2 | Flg_new_2 | Flg_new_2
TC HRGMv2_4062_2 HRGMv2_4062_2_27 42751 43659 + 2.A.69.4.6
Gene ID: HRGMv2_4062_2_18
Type: CAZyme
Location: 26299 - 28881 (+)
Gene ID: HRGMv2_4062_2_19
Type: STP
Location: 28897 - 30393 (+)
Gene ID: HRGMv2_4062_2_20
Type: TC
Location: 30471 - 31385 (+)
Gene ID: HRGMv2_4062_2_21
Type: TC
Location: 31390 - 32235 (+)
Gene ID: HRGMv2_4062_2_22
Type: CAZyme
Location: 32251 - 34002 (+)
Gene ID: HRGMv2_4062_2_23
Type: CAZyme
Location: 34016 - 35128 (+)
Gene ID: HRGMv2_4062_2_24
Type: CAZyme
Location: 35147 - 38830 (+)
Gene ID: HRGMv2_4062_2_25
Type:
Location: 38849 - 38980 (+)
Gene ID: HRGMv2_4062_2_26
Type: pfam
Location: 38988 - 42677 (+)
Gene ID: HRGMv2_4062_2_27
Type: TC
Location: 42751 - 43659 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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