Cluster: HRGMv2_4062_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4062
- CGC Family ID: CGCFAM_10535
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4062_26 | HRGMv2_4062_26_1 | 1 | 1830 | - | GH2 |
| TF | HRGMv2_4062_26 | HRGMv2_4062_26_2 | 2035 | 2853 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4062_26 | HRGMv2_4062_26_3 | 2914 | 4734 | - | GH20 |
| pfam | HRGMv2_4062_26 | HRGMv2_4062_26_4 | 4852 | 6663 | - | Flg_new |
| NULL(UNKNOWN) | HRGMv2_4062_26 | HRGMv2_4062_26_5 | 6663 | 6806 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4062_26 | HRGMv2_4062_26_6 | 6900 | 8849 | - | GH163 |
| NULL(UNKNOWN) | HRGMv2_4062_26 | HRGMv2_4062_26_7 | 8883 | 11642 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4062_26 | HRGMv2_4062_26_8 | 11679 | 14612 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4062_26 | HRGMv2_4062_26_9 | 14649 | 15581 | - | 3.A.1.1.48 |
| NULL(UNKNOWN) | HRGMv2_4062_26 | HRGMv2_4062_26_10 | 15583 | 16536 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4062_26 | HRGMv2_4062_26_11 | 16559 | 18229 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4062_26 | HRGMv2_4062_26_12 | 18589 | 21102 | + | GH94 |
Gene ID: HRGMv2_4062_26_1
Type: CAZyme
Location: 1 - 1830 (-)
Type: CAZyme
Location: 1 - 1830 (-)
Gene ID: HRGMv2_4062_26_2
Type: TF
Location: 2035 - 2853 (+)
Type: TF
Location: 2035 - 2853 (+)
Gene ID: HRGMv2_4062_26_3
Type: CAZyme
Location: 2914 - 4734 (-)
Type: CAZyme
Location: 2914 - 4734 (-)
Gene ID: HRGMv2_4062_26_4
Type: pfam
Location: 4852 - 6663 (-)
Type: pfam
Location: 4852 - 6663 (-)
Gene ID: HRGMv2_4062_26_5
Type:
Location: 6663 - 6806 (-)
Type:
Location: 6663 - 6806 (-)
Gene ID: HRGMv2_4062_26_6
Type: CAZyme
Location: 6900 - 8849 (-)
Type: CAZyme
Location: 6900 - 8849 (-)
Gene ID: HRGMv2_4062_26_7
Type:
Location: 8883 - 11642 (-)
Type:
Location: 8883 - 11642 (-)
Gene ID: HRGMv2_4062_26_8
Type:
Location: 11679 - 14612 (-)
Type:
Location: 11679 - 14612 (-)
Gene ID: HRGMv2_4062_26_9
Type: TC
Location: 14649 - 15581 (-)
Type: TC
Location: 14649 - 15581 (-)
Gene ID: HRGMv2_4062_26_10
Type:
Location: 15583 - 16536 (-)
Type:
Location: 15583 - 16536 (-)
Gene ID: HRGMv2_4062_26_11
Type:
Location: 16559 - 18229 (-)
Type:
Location: 16559 - 18229 (-)
Gene ID: HRGMv2_4062_26_12
Type: CAZyme
Location: 18589 - 21102 (+)
Type: CAZyme
Location: 18589 - 21102 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
UBA1259
Species
UBA1259 sp016295005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.