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Cluster: HRGMv2_4062_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4062_13 HRGMv2_4062_13_22 25032 26486 - 2.A.38.1.6
TC HRGMv2_4062_13 HRGMv2_4062_13_23 26489 27841 - 2.A.38.1.1
CAZyme HRGMv2_4062_13 HRGMv2_4062_13_24 27999 28589 + GH23
pfam HRGMv2_4062_13 HRGMv2_4062_13_25 28958 30355 - MatE | MatE
NULL(UNKNOWN) HRGMv2_4062_13 HRGMv2_4062_13_26 30488 30781 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4062_13 HRGMv2_4062_13_27 30784 31953 - 3.A.1.5.20
TC HRGMv2_4062_13 HRGMv2_4062_13_28 31955 33313 - 3.A.1.5.12
TC HRGMv2_4062_13 HRGMv2_4062_13_29 33316 34398 - 3.A.1.5.20
TC HRGMv2_4062_13 HRGMv2_4062_13_30 34410 35399 - 3.A.1.5.20
Gene ID: HRGMv2_4062_13_22
Type: TC
Location: 25032 - 26486 (-)
Gene ID: HRGMv2_4062_13_23
Type: TC
Location: 26489 - 27841 (-)
Gene ID: HRGMv2_4062_13_24
Type: CAZyme
Location: 27999 - 28589 (+)
Gene ID: HRGMv2_4062_13_25
Type: pfam
Location: 28958 - 30355 (-)
Gene ID: HRGMv2_4062_13_26
Type:
Location: 30488 - 30781 (-)
Gene ID: HRGMv2_4062_13_27
Type: TC
Location: 30784 - 31953 (-)
Gene ID: HRGMv2_4062_13_28
Type: TC
Location: 31955 - 33313 (-)
Gene ID: HRGMv2_4062_13_29
Type: TC
Location: 33316 - 34398 (-)
Gene ID: HRGMv2_4062_13_30
Type: TC
Location: 34410 - 35399 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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