Cluster: HRGMv2_4061_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4061_18 | HRGMv2_4061_18_6 | 6936 | 9107 | + | GH36 |
| pfam | HRGMv2_4061_18 | HRGMv2_4061_18_7 | 9620 | 10099 | + | FMN_red | Flavodoxin_4 |
| TC | HRGMv2_4061_18 | HRGMv2_4061_18_8 | 10147 | 10971 | + | 1.A.23.2.1 |
Gene ID: HRGMv2_4061_18_6
Type: CAZyme
Location: 6936 - 9107 (+)
Type: CAZyme
Location: 6936 - 9107 (+)
Gene ID: HRGMv2_4061_18_7
Type: pfam
Location: 9620 - 10099 (+)
Type: pfam
Location: 9620 - 10099 (+)
Gene ID: HRGMv2_4061_18_8
Type: TC
Location: 10147 - 10971 (+)
Type: TC
Location: 10147 - 10971 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_18_8 | vegetarian > omnivore | 1.62871 | 0.02517 |
| HRGMv2_4061_18_8 | vegetarian > vegan | 18.44465 | 0.00565 |