Cluster: HRGMv2_4061_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4061_14 | HRGMv2_4061_14_4 | 8145 | 10037 | - | GH43 |
| TC | HRGMv2_4061_14 | HRGMv2_4061_14_5 | 10099 | 10992 | - | 3.A.1.1.11 |
| TC | HRGMv2_4061_14 | HRGMv2_4061_14_6 | 11009 | 11971 | - | 3.A.1.1.14 |
Gene ID: HRGMv2_4061_14_4
Type: CAZyme
Location: 8145 - 10037 (-)
Type: CAZyme
Location: 8145 - 10037 (-)
Gene ID: HRGMv2_4061_14_5
Type: TC
Location: 10099 - 10992 (-)
Type: TC
Location: 10099 - 10992 (-)
Gene ID: HRGMv2_4061_14_6
Type: TC
Location: 11009 - 11971 (-)
Type: TC
Location: 11009 - 11971 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_14_4 | vegetarian > omnivore | 1.79349 | 0.02517 |
| HRGMv2_4061_14_4 | vegetarian > vegan | 1.42015 | 0.00565 |
| HRGMv2_4061_14_6 | vegetarian > omnivore | 1.97937 | 0.02517 |
| HRGMv2_4061_14_6 | vegetarian > vegan | 1.70171 | 0.00565 |