Cluster: HRGMv2_4061_CGC5
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4061
- CGC Family ID: CGCFAM_04546
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4061_9 | HRGMv2_4061_9_15 | 16674 | 18434 | - | GH2 |
| CAZyme | HRGMv2_4061_9 | HRGMv2_4061_9_16 | 18635 | 19918 | - | GH29 |
| TF | HRGMv2_4061_9 | HRGMv2_4061_9_17 | 20146 | 21105 | + | HTH_5 |
| peptidase | HRGMv2_4061_9 | HRGMv2_4061_9_18 | 21385 | 22731 | + | M20.UPD |
| TC | HRGMv2_4061_9 | HRGMv2_4061_9_19 | 22828 | 23718 | - | 3.A.1.1.34 |
| TC | HRGMv2_4061_9 | HRGMv2_4061_9_20 | 23705 | 24598 | - | 3.A.1.1.11 |
| STP | HRGMv2_4061_9 | HRGMv2_4061_9_21 | 24623 | 26569 | - | SBP_bac_1 |
| NULL(UNKNOWN) | HRGMv2_4061_9 | HRGMv2_4061_9_22 | 26579 | 28081 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4061_9 | HRGMv2_4061_9_23 | 28078 | 29232 | - | GH43_34 |
Gene ID: HRGMv2_4061_9_15
Type: CAZyme
Location: 16674 - 18434 (-)
Type: CAZyme
Location: 16674 - 18434 (-)
Gene ID: HRGMv2_4061_9_16
Type: CAZyme
Location: 18635 - 19918 (-)
Type: CAZyme
Location: 18635 - 19918 (-)
Gene ID: HRGMv2_4061_9_17
Type: TF
Location: 20146 - 21105 (+)
Type: TF
Location: 20146 - 21105 (+)
Gene ID: HRGMv2_4061_9_18
Type: peptidase
Location: 21385 - 22731 (+)
Type: peptidase
Location: 21385 - 22731 (+)
Gene ID: HRGMv2_4061_9_19
Type: TC
Location: 22828 - 23718 (-)
Type: TC
Location: 22828 - 23718 (-)
Gene ID: HRGMv2_4061_9_20
Type: TC
Location: 23705 - 24598 (-)
Type: TC
Location: 23705 - 24598 (-)
Gene ID: HRGMv2_4061_9_21
Type: STP
Location: 24623 - 26569 (-)
Type: STP
Location: 24623 - 26569 (-)
Gene ID: HRGMv2_4061_9_22
Type:
Location: 26579 - 28081 (-)
Type:
Location: 26579 - 28081 (-)
Gene ID: HRGMv2_4061_9_23
Type: CAZyme
Location: 28078 - 29232 (-)
Type: CAZyme
Location: 28078 - 29232 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_9_18 | vegetarian > omnivore | 1.81779 | 0.02517 |
| HRGMv2_4061_9_18 | vegetarian > vegan | 20.05510 | 0.00565 |
| HRGMv2_4061_9_19 | vegetarian > omnivore | 2.36557 | 0.02517 |
| HRGMv2_4061_9_19 | vegetarian > vegan | 3.57382 | 0.00565 |
| HRGMv2_4061_9_20 | vegetarian > omnivore | 2.47325 | 0.02517 |
| HRGMv2_4061_9_20 | vegetarian > vegan | 20.36341 | 0.00565 |
| HRGMv2_4061_9_21 | vegetarian > omnivore | 2.50322 | 0.02517 |
| HRGMv2_4061_9_21 | vegetarian > vegan | 20.18665 | 0.00565 |
| HRGMv2_4061_9_22 | vegetarian > omnivore | 2.69845 | 0.02517 |
| HRGMv2_4061_9_22 | vegetarian > vegan | 6.12500 | 0.00565 |
| HRGMv2_4061_9_23 | vegetarian > omnivore | 2.38672 | 0.02517 |
| HRGMv2_4061_9_23 | vegetarian > vegan | 20.18101 | 0.00565 |