Cluster: HRGMv2_4061_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- CGC Family ID: CGCFAM_07679
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4061_86 | HRGMv2_4061_86_3 | 3792 | 5480 | + | 1.A.26.1.2 |
| NULL(UNKNOWN) | HRGMv2_4061_86 | HRGMv2_4061_86_4 | 5529 | 5936 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4061_86 | HRGMv2_4061_86_5 | 5995 | 6456 | - | SpoU_methylase |
| CAZyme | HRGMv2_4061_86 | HRGMv2_4061_86_6 | 6463 | 8331 | - | GH20 |
Gene ID: HRGMv2_4061_86_3
Type: TC
Location: 3792 - 5480 (+)
Type: TC
Location: 3792 - 5480 (+)
Gene ID: HRGMv2_4061_86_4
Type:
Location: 5529 - 5936 (+)
Type:
Location: 5529 - 5936 (+)
Gene ID: HRGMv2_4061_86_5
Type: pfam
Location: 5995 - 6456 (-)
Type: pfam
Location: 5995 - 6456 (-)
Gene ID: HRGMv2_4061_86_6
Type: CAZyme
Location: 6463 - 8331 (-)
Type: CAZyme
Location: 6463 - 8331 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_86_3 | vegetarian > omnivore | 1.33501 | 0.02517 |
| HRGMv2_4061_86_3 | vegetarian > vegan | 1.18947 | 0.00565 |
| HRGMv2_4061_86_5 | vegetarian > omnivore | 2.10261 | 0.02517 |
| HRGMv2_4061_86_6 | vegetarian > omnivore | 1.26347 | 0.02517 |
| HRGMv2_4061_86_6 | vegetarian > vegan | 1.30468 | 0.00565 |