Cluster: HRGMv2_4061_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- CGC Family ID: CGCFAM_00560
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4061_50 | HRGMv2_4061_50_1 | 2 | 517 | - | 3.A.1.1.28 |
| TC | HRGMv2_4061_50 | HRGMv2_4061_50_2 | 536 | 1456 | - | 3.A.1.1.36 |
| TC | HRGMv2_4061_50 | HRGMv2_4061_50_3 | 1443 | 2489 | - | 3.A.1.1.20 |
| STP | HRGMv2_4061_50 | HRGMv2_4061_50_4 | 2503 | 3948 | - | SBP_bac_1 |
| CAZyme | HRGMv2_4061_50 | HRGMv2_4061_50_5 | 3973 | 5979 | - | GH97 |
Gene ID: HRGMv2_4061_50_1
Type: TC
Location: 2 - 517 (-)
Type: TC
Location: 2 - 517 (-)
Gene ID: HRGMv2_4061_50_2
Type: TC
Location: 536 - 1456 (-)
Type: TC
Location: 536 - 1456 (-)
Gene ID: HRGMv2_4061_50_3
Type: TC
Location: 1443 - 2489 (-)
Type: TC
Location: 1443 - 2489 (-)
Gene ID: HRGMv2_4061_50_4
Type: STP
Location: 2503 - 3948 (-)
Type: STP
Location: 2503 - 3948 (-)
Gene ID: HRGMv2_4061_50_5
Type: CAZyme
Location: 3973 - 5979 (-)
Type: CAZyme
Location: 3973 - 5979 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_50_3 | vegetarian > omnivore | 1.58878 | 0.02517 |
| HRGMv2_4061_50_3 | vegetarian > vegan | 17.79789 | 0.00565 |
| HRGMv2_4061_50_5 | vegetarian > omnivore | 1.01629 | 0.02517 |
| HRGMv2_4061_50_5 | vegetarian > vegan | 17.31327 | 0.00565 |