Cluster: HRGMv2_4061_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4061
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4061_46 | HRGMv2_4061_46_4 | 3339 | 5261 | + | GH13_9 |
| pfam | HRGMv2_4061_46 | HRGMv2_4061_46_5 | 5258 | 6439 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4061_46 | HRGMv2_4061_46_6 | 6455 | 7567 | + | NTP_transferase | Bactofilin | Hexapep_GlmU |
| CAZyme | HRGMv2_4061_46 | HRGMv2_4061_46_7 | 7741 | 9549 | + | GT5 |
| CAZyme | HRGMv2_4061_46 | HRGMv2_4061_46_8 | 9583 | 12009 | + | GT35 |
| CAZyme | HRGMv2_4061_46 | HRGMv2_4061_46_9 | 12010 | 13785 | + | GH13_39 |
| TC | HRGMv2_4061_46 | HRGMv2_4061_46_10 | 14273 | 15625 | + | 2.A.37.2.2 |
Gene ID: HRGMv2_4061_46_4
Type: CAZyme
Location: 3339 - 5261 (+)
Type: CAZyme
Location: 3339 - 5261 (+)
Gene ID: HRGMv2_4061_46_5
Type: pfam
Location: 5258 - 6439 (+)
Type: pfam
Location: 5258 - 6439 (+)
Gene ID: HRGMv2_4061_46_6
Type: pfam
Location: 6455 - 7567 (+)
Type: pfam
Location: 6455 - 7567 (+)
Gene ID: HRGMv2_4061_46_7
Type: CAZyme
Location: 7741 - 9549 (+)
Type: CAZyme
Location: 7741 - 9549 (+)
Gene ID: HRGMv2_4061_46_8
Type: CAZyme
Location: 9583 - 12009 (+)
Type: CAZyme
Location: 9583 - 12009 (+)
Gene ID: HRGMv2_4061_46_9
Type: CAZyme
Location: 12010 - 13785 (+)
Type: CAZyme
Location: 12010 - 13785 (+)
Gene ID: HRGMv2_4061_46_10
Type: TC
Location: 14273 - 15625 (+)
Type: TC
Location: 14273 - 15625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_46_5 | vegetarian > omnivore | 1.46668 | 0.02517 |
| HRGMv2_4061_46_5 | vegetarian > vegan | 1.87575 | 0.00565 |
| HRGMv2_4061_46_7 | vegetarian > omnivore | 1.57034 | 0.02517 |
| HRGMv2_4061_46_7 | vegetarian > vegan | 1.64158 | 0.00565 |
| HRGMv2_4061_46_9 | vegan > omnivore | 2.11643 | 0.04288 |
| HRGMv2_4061_46_9 | vegetarian > omnivore | 1.38305 | 0.02517 |
| HRGMv2_4061_46_10 | vegetarian > omnivore | 1.48252 | 0.02517 |
| HRGMv2_4061_46_10 | vegetarian > vegan | 1.80387 | 0.00565 |