Cluster: HRGMv2_4061_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- CGC Family ID: CGCFAM_00141
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4061_34 | HRGMv2_4061_34_2 | 146 | 1075 | - | 3.A.1.1.10 |
| TC | HRGMv2_4061_34 | HRGMv2_4061_34_3 | 1072 | 2016 | - | 3.A.1.1.10 |
| TF | HRGMv2_4061_34 | HRGMv2_4061_34_4 | 1988 | 2926 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_4061_34 | HRGMv2_4061_34_5 | 2954 | 6631 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4061_34 | HRGMv2_4061_34_6 | 7034 | 9310 | + | GH78 |
Gene ID: HRGMv2_4061_34_2
Type: TC
Location: 146 - 1075 (-)
Type: TC
Location: 146 - 1075 (-)
Gene ID: HRGMv2_4061_34_3
Type: TC
Location: 1072 - 2016 (-)
Type: TC
Location: 1072 - 2016 (-)
Gene ID: HRGMv2_4061_34_4
Type: TF
Location: 1988 - 2926 (-)
Type: TF
Location: 1988 - 2926 (-)
Gene ID: HRGMv2_4061_34_5
Type:
Location: 2954 - 6631 (-)
Type:
Location: 2954 - 6631 (-)
Gene ID: HRGMv2_4061_34_6
Type: CAZyme
Location: 7034 - 9310 (+)
Type: CAZyme
Location: 7034 - 9310 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_34_2 | vegetarian > vegan | 3.04313 | 0.00565 |
| HRGMv2_4061_34_4 | vegetarian > omnivore | 1.79027 | 0.02517 |
| HRGMv2_4061_34_4 | vegetarian > vegan | 18.11992 | 0.00565 |
| HRGMv2_4061_34_5 | vegetarian > omnivore | 1.85925 | 0.02517 |
| HRGMv2_4061_34_5 | vegetarian > vegan | 17.75396 | 0.00565 |
| HRGMv2_4061_34_6 | vegetarian > omnivore | 2.03298 | 0.02517 |
| HRGMv2_4061_34_6 | vegetarian > vegan | 17.65729 | 0.00565 |