Cluster: HRGMv2_4061_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4061_23 | HRGMv2_4061_23_11 | 8089 | 9012 | - | GH43_32 |
| pfam | HRGMv2_4061_23 | HRGMv2_4061_23_12 | 9240 | 9500 | + | SpoIIID |
| pfam | HRGMv2_4061_23 | HRGMv2_4061_23_13 | 9561 | 10259 | - | Aldolase_II |
| TC | HRGMv2_4061_23 | HRGMv2_4061_23_14 | 10360 | 11766 | - | 2.A.66.1.33 |
| pfam | HRGMv2_4061_23 | HRGMv2_4061_23_15 | 11931 | 12209 | - | SpoVG |
| STP | HRGMv2_4061_23 | HRGMv2_4061_23_16 | 12679 | 14532 | - | Pyr_redox_2 |
| TC | HRGMv2_4061_23 | HRGMv2_4061_23_17 | 14553 | 15770 | - | 3.A.1.11.8 |
| TC | HRGMv2_4061_23 | HRGMv2_4061_23_18 | 15827 | 16648 | - | 3.A.1.11.8 |
| TC | HRGMv2_4061_23 | HRGMv2_4061_23_19 | 16645 | 17460 | - | 3.A.1.11.7 |
| TC | HRGMv2_4061_23 | HRGMv2_4061_23_20 | 17444 | 18973 | - | 3.A.1.11.8 |
Gene ID: HRGMv2_4061_23_11
Type: CAZyme
Location: 8089 - 9012 (-)
Type: CAZyme
Location: 8089 - 9012 (-)
Gene ID: HRGMv2_4061_23_12
Type: pfam
Location: 9240 - 9500 (+)
Type: pfam
Location: 9240 - 9500 (+)
Gene ID: HRGMv2_4061_23_13
Type: pfam
Location: 9561 - 10259 (-)
Type: pfam
Location: 9561 - 10259 (-)
Gene ID: HRGMv2_4061_23_14
Type: TC
Location: 10360 - 11766 (-)
Type: TC
Location: 10360 - 11766 (-)
Gene ID: HRGMv2_4061_23_15
Type: pfam
Location: 11931 - 12209 (-)
Type: pfam
Location: 11931 - 12209 (-)
Gene ID: HRGMv2_4061_23_16
Type: STP
Location: 12679 - 14532 (-)
Type: STP
Location: 12679 - 14532 (-)
Gene ID: HRGMv2_4061_23_17
Type: TC
Location: 14553 - 15770 (-)
Type: TC
Location: 14553 - 15770 (-)
Gene ID: HRGMv2_4061_23_18
Type: TC
Location: 15827 - 16648 (-)
Type: TC
Location: 15827 - 16648 (-)
Gene ID: HRGMv2_4061_23_19
Type: TC
Location: 16645 - 17460 (-)
Type: TC
Location: 16645 - 17460 (-)
Gene ID: HRGMv2_4061_23_20
Type: TC
Location: 17444 - 18973 (-)
Type: TC
Location: 17444 - 18973 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_23_11 | vegetarian > omnivore | 1.22464 | 0.02517 |
| HRGMv2_4061_23_11 | vegetarian > vegan | 2.06693 | 0.00565 |
| HRGMv2_4061_23_15 | vegetarian > omnivore | 2.93931 | 0.02517 |
| HRGMv2_4061_23_15 | vegetarian > vegan | 1.07625 | 0.00565 |
| HRGMv2_4061_23_17 | vegetarian > omnivore | 1.88772 | 0.02517 |
| HRGMv2_4061_23_17 | vegetarian > vegan | 2.58923 | 0.00565 |
| HRGMv2_4061_23_18 | vegetarian > omnivore | 2.34221 | 0.02517 |
| HRGMv2_4061_23_18 | vegetarian > vegan | 3.09537 | 0.00565 |
| HRGMv2_4061_23_19 | vegetarian > omnivore | 1.77925 | 0.02517 |