Cluster: HRGMv2_4061_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4061_18 | HRGMv2_4061_18_12 | 14471 | 16231 | + | GH2 |
| pfam | HRGMv2_4061_18 | HRGMv2_4061_18_13 | 16228 | 18153 | + | SBP_bac_1 | SBP_bac_8 |
| TC | HRGMv2_4061_18 | HRGMv2_4061_18_14 | 18185 | 19132 | + | 3.A.1.1.11 |
| TC | HRGMv2_4061_18 | HRGMv2_4061_18_15 | 19142 | 20032 | + | 3.A.1.1.41 |
Gene ID: HRGMv2_4061_18_12
Type: CAZyme
Location: 14471 - 16231 (+)
Type: CAZyme
Location: 14471 - 16231 (+)
Gene ID: HRGMv2_4061_18_13
Type: pfam
Location: 16228 - 18153 (+)
Type: pfam
Location: 16228 - 18153 (+)
Gene ID: HRGMv2_4061_18_14
Type: TC
Location: 18185 - 19132 (+)
Type: TC
Location: 18185 - 19132 (+)
Gene ID: HRGMv2_4061_18_15
Type: TC
Location: 19142 - 20032 (+)
Type: TC
Location: 19142 - 20032 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_18_13 | vegetarian > omnivore | 1.58407 | 0.02517 |
| HRGMv2_4061_18_13 | vegetarian > vegan | 18.82690 | 0.00565 |
| HRGMv2_4061_18_14 | vegetarian > omnivore | 1.34456 | 0.02517 |
| HRGMv2_4061_18_14 | vegetarian > vegan | 19.04241 | 0.00565 |
| HRGMv2_4061_18_15 | vegetarian > vegan | 17.65870 | 0.00565 |