Cluster: HRGMv2_4061_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4061
- CGC Family ID: CGCFAM_06026
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4061_1 | HRGMv2_4061_1_20 | 18805 | 19245 | - | 3.A.7.19.1 |
| pfam | HRGMv2_4061_1 | HRGMv2_4061_1_21 | 19261 | 19542 | - | Ribosomal_S6 |
| pfam | HRGMv2_4061_1 | HRGMv2_4061_1_22 | 19777 | 20796 | - | ADH_zinc_N | ADH_N |
| CAZyme | HRGMv2_4061_1 | HRGMv2_4061_1_23 | 21071 | 27085 | - | GH43_33 |
| pfam | HRGMv2_4061_1 | HRGMv2_4061_1_24 | 27317 | 28171 | - | Lactamase_B | Lactamase_B_2 |
| pfam | HRGMv2_4061_1 | HRGMv2_4061_1_25 | 28280 | 29014 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | HRGMv2_4061_1 | HRGMv2_4061_1_26 | 29023 | 29871 | - | 3.A.1.25.4 |
| TC | HRGMv2_4061_1 | HRGMv2_4061_1_27 | 29864 | 30727 | - | 3.A.1.26.7 |
| TC | HRGMv2_4061_1 | HRGMv2_4061_1_28 | 30718 | 31545 | - | 3.A.1.26.7 |
Gene ID: HRGMv2_4061_1_20
Type: TC
Location: 18805 - 19245 (-)
Type: TC
Location: 18805 - 19245 (-)
Gene ID: HRGMv2_4061_1_21
Type: pfam
Location: 19261 - 19542 (-)
Type: pfam
Location: 19261 - 19542 (-)
Gene ID: HRGMv2_4061_1_22
Type: pfam
Location: 19777 - 20796 (-)
Type: pfam
Location: 19777 - 20796 (-)
Gene ID: HRGMv2_4061_1_23
Type: CAZyme
Location: 21071 - 27085 (-)
Type: CAZyme
Location: 21071 - 27085 (-)
Gene ID: HRGMv2_4061_1_24
Type: pfam
Location: 27317 - 28171 (-)
Type: pfam
Location: 27317 - 28171 (-)
Gene ID: HRGMv2_4061_1_25
Type: pfam
Location: 28280 - 29014 (-)
Type: pfam
Location: 28280 - 29014 (-)
Gene ID: HRGMv2_4061_1_26
Type: TC
Location: 29023 - 29871 (-)
Type: TC
Location: 29023 - 29871 (-)
Gene ID: HRGMv2_4061_1_27
Type: TC
Location: 29864 - 30727 (-)
Type: TC
Location: 29864 - 30727 (-)
Gene ID: HRGMv2_4061_1_28
Type: TC
Location: 30718 - 31545 (-)
Type: TC
Location: 30718 - 31545 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp934277845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4061_1_20 | vegetarian > omnivore | 1.88943 | 0.02517 |
| HRGMv2_4061_1_20 | vegetarian > vegan | 1.51332 | 0.00565 |
| HRGMv2_4061_1_21 | vegetarian > omnivore | 2.15086 | 0.02517 |
| HRGMv2_4061_1_26 | vegetarian > omnivore | 2.04996 | 0.02517 |
| HRGMv2_4061_1_26 | vegetarian > vegan | 1.89626 | 0.00565 |
| HRGMv2_4061_1_27 | vegetarian > omnivore | 1.86396 | 0.02517 |
| HRGMv2_4061_1_27 | vegetarian > vegan | 1.11230 | 0.00565 |
| HRGMv2_4061_1_28 | vegetarian > omnivore | 2.27201 | 0.02517 |
| HRGMv2_4061_1_28 | vegetarian > vegan | 1.75480 | 0.00565 |