dbCAN Logo

Cluster: HRGMv2_4060_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4060_7 HRGMv2_4060_7_7 5988 7406 - 3.A.1.1.26
pfam HRGMv2_4060_7 HRGMv2_4060_7_8 7543 8448 - OTCace | OTCace_N
STP HRGMv2_4060_7 HRGMv2_4060_7_9 8504 9079 - HD
TC HRGMv2_4060_7 HRGMv2_4060_7_10 9319 10470 + 2.A.88.3.1
CAZyme HRGMv2_4060_7 HRGMv2_4060_7_11 10539 11516 - GH179
pfam HRGMv2_4060_7 HRGMv2_4060_7_12 11510 12358 - AP_endonuc_2
TF HRGMv2_4060_7 HRGMv2_4060_7_13 12474 13355 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4060_7 HRGMv2_4060_7_14 13444 15975 - GH116
Gene ID: HRGMv2_4060_7_7
Type: TC
Location: 5988 - 7406 (-)
Gene ID: HRGMv2_4060_7_8
Type: pfam
Location: 7543 - 8448 (-)
Gene ID: HRGMv2_4060_7_9
Type: STP
Location: 8504 - 9079 (-)
Gene ID: HRGMv2_4060_7_10
Type: TC
Location: 9319 - 10470 (+)
Gene ID: HRGMv2_4060_7_11
Type: CAZyme
Location: 10539 - 11516 (-)
Gene ID: HRGMv2_4060_7_12
Type: pfam
Location: 11510 - 12358 (-)
Gene ID: HRGMv2_4060_7_13
Type: TF
Location: 12474 - 13355 (+)
Gene ID: HRGMv2_4060_7_14
Type: CAZyme
Location: 13444 - 15975 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List