Cluster: HRGMv2_4060_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4060
- CGC Family ID: CGCFAM_00215
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4060_189 | HRGMv2_4060_189_1 | 37 | 2286 | - | GT35 |
| TC | HRGMv2_4060_189 | HRGMv2_4060_189_2 | 2289 | 3149 | - | 3.A.1.1.27 |
| TC | HRGMv2_4060_189 | HRGMv2_4060_189_3 | 3146 | 4006 | - | 3.A.1.1.27 |
Gene ID: HRGMv2_4060_189_1
Type: CAZyme
Location: 37 - 2286 (-)
Type: CAZyme
Location: 37 - 2286 (-)
Gene ID: HRGMv2_4060_189_2
Type: TC
Location: 2289 - 3149 (-)
Type: TC
Location: 2289 - 3149 (-)
Gene ID: HRGMv2_4060_189_3
Type: TC
Location: 3146 - 4006 (-)
Type: TC
Location: 3146 - 4006 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
UMGS775
Species
UMGS775 sp944372565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4060_189_1 | vegetarian > vegan | 2.52250 | 0.03116 |
| HRGMv2_4060_189_2 | vegetarian > vegan | 2.51807 | 0.03116 |
| HRGMv2_4060_189_3 | vegetarian > vegan | 4.69103 | 0.03116 |