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Cluster: HRGMv2_4059_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4059_26 HRGMv2_4059_26_4 2303 3214 - 2.A.69.4.6
pfam HRGMv2_4059_26 HRGMv2_4059_26_5 3281 7237 - SASA | Flg_new | Flg_new | Flg_new_2 | Flg_new_2 | Flg_new_2
CAZyme HRGMv2_4059_26 HRGMv2_4059_26_6 7277 8389 - GH5_13
CAZyme HRGMv2_4059_26 HRGMv2_4059_26_7 8417 10165 - GH2
TC HRGMv2_4059_26 HRGMv2_4059_26_8 10175 11170 - 3.A.1.1.7
TC HRGMv2_4059_26 HRGMv2_4059_26_9 11175 12095 - 3.A.1.1.3
NULL(UNKNOWN) HRGMv2_4059_26 HRGMv2_4059_26_10 12124 13596 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4059_26 HRGMv2_4059_26_11 13612 16206 - GH43_32
Gene ID: HRGMv2_4059_26_4
Type: TC
Location: 2303 - 3214 (-)
Gene ID: HRGMv2_4059_26_5
Type: pfam
Location: 3281 - 7237 (-)
Gene ID: HRGMv2_4059_26_6
Type: CAZyme
Location: 7277 - 8389 (-)
Gene ID: HRGMv2_4059_26_7
Type: CAZyme
Location: 8417 - 10165 (-)
Gene ID: HRGMv2_4059_26_8
Type: TC
Location: 10175 - 11170 (-)
Gene ID: HRGMv2_4059_26_9
Type: TC
Location: 11175 - 12095 (-)
Gene ID: HRGMv2_4059_26_10
Type:
Location: 12124 - 13596 (-)
Gene ID: HRGMv2_4059_26_11
Type: CAZyme
Location: 13612 - 16206 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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