dbCAN Logo

Cluster: HRGMv2_4059_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4059_17 HRGMv2_4059_17_18 22408 24639 - GT35
TC HRGMv2_4059_17 HRGMv2_4059_17_19 24651 26627 - 3.A.1.1.26
TC HRGMv2_4059_17 HRGMv2_4059_17_20 26642 27484 - 3.A.1.1.27
TC HRGMv2_4059_17 HRGMv2_4059_17_21 27481 28902 - 3.A.1.1.27
STP HRGMv2_4059_17 HRGMv2_4059_17_22 28916 30352 - SBP_bac_1
CAZyme HRGMv2_4059_17 HRGMv2_4059_17_23 30345 32051 - CBM34 | GH13_20
TF HRGMv2_4059_17 HRGMv2_4059_17_24 32087 32950 + LacI
pfam HRGMv2_4059_17 HRGMv2_4059_17_25 33032 34831 - Flg_new
CAZyme HRGMv2_4059_17 HRGMv2_4059_17_26 34853 37060 - CBM20 | GH13_2
Gene ID: HRGMv2_4059_17_18
Type: CAZyme
Location: 22408 - 24639 (-)
Gene ID: HRGMv2_4059_17_19
Type: TC
Location: 24651 - 26627 (-)
Gene ID: HRGMv2_4059_17_20
Type: TC
Location: 26642 - 27484 (-)
Gene ID: HRGMv2_4059_17_21
Type: TC
Location: 27481 - 28902 (-)
Gene ID: HRGMv2_4059_17_22
Type: STP
Location: 28916 - 30352 (-)
Gene ID: HRGMv2_4059_17_23
Type: CAZyme
Location: 30345 - 32051 (-)
Gene ID: HRGMv2_4059_17_24
Type: TF
Location: 32087 - 32950 (+)
Gene ID: HRGMv2_4059_17_25
Type: pfam
Location: 33032 - 34831 (-)
Gene ID: HRGMv2_4059_17_26
Type: CAZyme
Location: 34853 - 37060 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List