Cluster: HRGMv2_4057_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4057
- CGC Family ID: CGCFAM_06023
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4057_114 | HRGMv2_4057_114_4 | 2587 | 4356 | + | 3.A.1.21.1 |
| TC | HRGMv2_4057_114 | HRGMv2_4057_114_5 | 4361 | 6094 | + | 3.A.1.21.1 |
| CAZyme | HRGMv2_4057_114 | HRGMv2_4057_114_6 | 6937 | 8421 | - | GH78 |
Gene ID: HRGMv2_4057_114_4
Type: TC
Location: 2587 - 4356 (+)
Type: TC
Location: 2587 - 4356 (+)
Gene ID: HRGMv2_4057_114_5
Type: TC
Location: 4361 - 6094 (+)
Type: TC
Location: 4361 - 6094 (+)
Gene ID: HRGMv2_4057_114_6
Type: CAZyme
Location: 6937 - 8421 (-)
Type: CAZyme
Location: 6937 - 8421 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UMGS416
Genus
Parachristensenella
Species
Parachristensenella avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4057_114_5 | omnivore > vegetarian | 1.18786 | 0.02277 |
| HRGMv2_4057_114_5 | vegan > vegetarian | 1.23812 | 0.00707 |