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Cluster: HRGMv2_4057_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4057_1 HRGMv2_4057_1_1 2 232 + 3.A.2.2.2
TC HRGMv2_4057_1 HRGMv2_4057_1_2 236 1999 + 3.A.2.2.2
TC HRGMv2_4057_1 HRGMv2_4057_1_3 1996 3378 + 3.A.2.2.2
TC HRGMv2_4057_1 HRGMv2_4057_1_4 3382 4026 + 3.A.2.2.2
CAZyme HRGMv2_4057_1 HRGMv2_4057_1_5 4089 4895 + CE1
CAZyme HRGMv2_4057_1 HRGMv2_4057_1_6 4876 5715 + CE1
pfam HRGMv2_4057_1 HRGMv2_4057_1_7 6345 7076 - ThuA
pfam HRGMv2_4057_1 HRGMv2_4057_1_8 7215 7943 + Methyltrans_RNA | PUA_4
CAZyme HRGMv2_4057_1 HRGMv2_4057_1_9 8037 9131 + GH33
Gene ID: HRGMv2_4057_1_1
Type: TC
Location: 2 - 232 (+)
Gene ID: HRGMv2_4057_1_2
Type: TC
Location: 236 - 1999 (+)
Gene ID: HRGMv2_4057_1_3
Type: TC
Location: 1996 - 3378 (+)
Gene ID: HRGMv2_4057_1_4
Type: TC
Location: 3382 - 4026 (+)
Gene ID: HRGMv2_4057_1_5
Type: CAZyme
Location: 4089 - 4895 (+)
Gene ID: HRGMv2_4057_1_6
Type: CAZyme
Location: 4876 - 5715 (+)
Gene ID: HRGMv2_4057_1_7
Type: pfam
Location: 6345 - 7076 (-)
Gene ID: HRGMv2_4057_1_8
Type: pfam
Location: 7215 - 7943 (+)
Gene ID: HRGMv2_4057_1_9
Type: CAZyme
Location: 8037 - 9131 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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