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Cluster: HRGMv2_4056_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4056_5 HRGMv2_4056_5_28 28918 30204 + 2.A.39.1.1
pfam HRGMv2_4056_5 HRGMv2_4056_5_29 30411 31757 + ELFV_dehydrog | ELFV_dehydrog_N
TC HRGMv2_4056_5 HRGMv2_4056_5_30 32073 34718 + 3.A.3.2.21
CAZyme HRGMv2_4056_5 HRGMv2_4056_5_31 35083 36888 - GH2
TC HRGMv2_4056_5 HRGMv2_4056_5_32 36885 37139 - 2.A.1.84.3
TC HRGMv2_4056_5 HRGMv2_4056_5_33 37085 38086 - 2.A.1.84.3
TC HRGMv2_4056_5 HRGMv2_4056_5_34 38107 39276 - 2.A.4.7.4
pfam HRGMv2_4056_5 HRGMv2_4056_5_35 39398 41170 - MMR_HSR1 | GTP-bdg_N | GTP-bdg_M | HflX_C
TF HRGMv2_4056_5 HRGMv2_4056_5_36 41370 41825 + MarR
TC HRGMv2_4056_5 HRGMv2_4056_5_37 41827 43554 + 3.A.1.135.5
TC HRGMv2_4056_5 HRGMv2_4056_5_38 43556 45442 + 3.A.1.135.5
TF HRGMv2_4056_5 HRGMv2_4056_5_39 45524 46444 - HTH_1
TC HRGMv2_4056_5 HRGMv2_4056_5_40 46578 48749 - 3.A.10.1.4
Gene ID: HRGMv2_4056_5_28
Type: TC
Location: 28918 - 30204 (+)
Gene ID: HRGMv2_4056_5_29
Type: pfam
Location: 30411 - 31757 (+)
Gene ID: HRGMv2_4056_5_30
Type: TC
Location: 32073 - 34718 (+)
Gene ID: HRGMv2_4056_5_31
Type: CAZyme
Location: 35083 - 36888 (-)
Gene ID: HRGMv2_4056_5_32
Type: TC
Location: 36885 - 37139 (-)
Gene ID: HRGMv2_4056_5_33
Type: TC
Location: 37085 - 38086 (-)
Gene ID: HRGMv2_4056_5_34
Type: TC
Location: 38107 - 39276 (-)
Gene ID: HRGMv2_4056_5_35
Type: pfam
Location: 39398 - 41170 (-)
Gene ID: HRGMv2_4056_5_36
Type: TF
Location: 41370 - 41825 (+)
Gene ID: HRGMv2_4056_5_37
Type: TC
Location: 41827 - 43554 (+)
Gene ID: HRGMv2_4056_5_38
Type: TC
Location: 43556 - 45442 (+)
Gene ID: HRGMv2_4056_5_39
Type: TF
Location: 45524 - 46444 (-)
Gene ID: HRGMv2_4056_5_40
Type: TC
Location: 46578 - 48749 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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