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Cluster: HRGMv2_4056_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4056_34 HRGMv2_4056_34_5 5317 6972 + CBM34 | GH13_20
pfam HRGMv2_4056_34 HRGMv2_4056_34_6 7023 8507 + SBP_bac_1 | SBP_bac_8
TC HRGMv2_4056_34 HRGMv2_4056_34_7 8570 9925 + 3.A.1.1.27
TC HRGMv2_4056_34 HRGMv2_4056_34_8 9922 10767 + 3.A.1.1.27
CAZyme HRGMv2_4056_34 HRGMv2_4056_34_9 10772 12334 + GH13_36
pfam HRGMv2_4056_34 HRGMv2_4056_34_10 12528 14069 - Metallophos | 5_nucleotid_C
TC HRGMv2_4056_34 HRGMv2_4056_34_11 14076 14885 - 3.A.1.9.1
TC HRGMv2_4056_34 HRGMv2_4056_34_12 14901 15722 - 3.A.1.9.2
TC HRGMv2_4056_34 HRGMv2_4056_34_13 15719 16483 - 3.A.1.9.2
Gene ID: HRGMv2_4056_34_5
Type: CAZyme
Location: 5317 - 6972 (+)
Gene ID: HRGMv2_4056_34_6
Type: pfam
Location: 7023 - 8507 (+)
Gene ID: HRGMv2_4056_34_7
Type: TC
Location: 8570 - 9925 (+)
Gene ID: HRGMv2_4056_34_8
Type: TC
Location: 9922 - 10767 (+)
Gene ID: HRGMv2_4056_34_9
Type: CAZyme
Location: 10772 - 12334 (+)
Gene ID: HRGMv2_4056_34_10
Type: pfam
Location: 12528 - 14069 (-)
Gene ID: HRGMv2_4056_34_11
Type: TC
Location: 14076 - 14885 (-)
Gene ID: HRGMv2_4056_34_12
Type: TC
Location: 14901 - 15722 (-)
Gene ID: HRGMv2_4056_34_13
Type: TC
Location: 15719 - 16483 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4056_34_8 vegetarian > omnivore 2.14991 0.01882
HRGMv2_4056_34_8 vegetarian > vegan 3.63500 0.01416

🧭 Explore Read Mapping of CGC

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