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Cluster: HRGMv2_4056_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4056_32 HRGMv2_4056_32_2 992 2332 - 1.A.26.1.2
TF HRGMv2_4056_32 HRGMv2_4056_32_3 2631 3857 - MarR
pfam HRGMv2_4056_32 HRGMv2_4056_32_4 4097 5488 + MR_MLE_C
TC HRGMv2_4056_32 HRGMv2_4056_32_5 5485 6279 + 3.A.1.17.6
TC HRGMv2_4056_32 HRGMv2_4056_32_6 6283 7104 + 3.A.1.17.8
TC HRGMv2_4056_32 HRGMv2_4056_32_7 7188 8279 + 3.A.1.17.8
TC HRGMv2_4056_32 HRGMv2_4056_32_8 8387 9151 + 3.A.1.17.5
CAZyme HRGMv2_4056_32 HRGMv2_4056_32_9 9153 10187 + GH179
pfam HRGMv2_4056_32 HRGMv2_4056_32_10 10184 10957 + Creatininase
pfam HRGMv2_4056_32 HRGMv2_4056_32_11 11053 11817 + Glucosamine_iso
CAZyme HRGMv2_4056_32 HRGMv2_4056_32_12 11817 13010 + CE9
Gene ID: HRGMv2_4056_32_2
Type: TC
Location: 992 - 2332 (-)
Gene ID: HRGMv2_4056_32_3
Type: TF
Location: 2631 - 3857 (-)
Gene ID: HRGMv2_4056_32_4
Type: pfam
Location: 4097 - 5488 (+)
Gene ID: HRGMv2_4056_32_5
Type: TC
Location: 5485 - 6279 (+)
Gene ID: HRGMv2_4056_32_6
Type: TC
Location: 6283 - 7104 (+)
Gene ID: HRGMv2_4056_32_7
Type: TC
Location: 7188 - 8279 (+)
Gene ID: HRGMv2_4056_32_8
Type: TC
Location: 8387 - 9151 (+)
Gene ID: HRGMv2_4056_32_9
Type: CAZyme
Location: 9153 - 10187 (+)
Gene ID: HRGMv2_4056_32_10
Type: pfam
Location: 10184 - 10957 (+)
Gene ID: HRGMv2_4056_32_11
Type: pfam
Location: 11053 - 11817 (+)
Gene ID: HRGMv2_4056_32_12
Type: CAZyme
Location: 11817 - 13010 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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