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Cluster: HRGMv2_4055_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4055_7 HRGMv2_4055_7_19 17763 18491 + 9.B.31.1.2
pfam HRGMv2_4055_7 HRGMv2_4055_7_20 18614 19828 + SpoIVA_ATPase | SpoIVA_middle | SpoIVA_C
pfam HRGMv2_4055_7 HRGMv2_4055_7_21 19937 25000 - LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5
TC HRGMv2_4055_7 HRGMv2_4055_7_22 25221 26939 + 3.A.1.135.5
TC HRGMv2_4055_7 HRGMv2_4055_7_23 26936 28729 + 3.A.1.135.5
NULL(UNKNOWN) HRGMv2_4055_7 HRGMv2_4055_7_24 28800 28925 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4055_7 HRGMv2_4055_7_25 29061 30641 + GT111
pfam HRGMv2_4055_7 HRGMv2_4055_7_26 30661 31716 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | GDP_Man_Dehyd
pfam HRGMv2_4055_7 HRGMv2_4055_7_27 31759 31992 + DUF378
TC HRGMv2_4055_7 HRGMv2_4055_7_28 32520 33221 + 3.A.1.122.14
Gene ID: HRGMv2_4055_7_19
Type: TC
Location: 17763 - 18491 (+)
Gene ID: HRGMv2_4055_7_20
Type: pfam
Location: 18614 - 19828 (+)
Gene ID: HRGMv2_4055_7_21
Type: pfam
Location: 19937 - 25000 (-)
Gene ID: HRGMv2_4055_7_22
Type: TC
Location: 25221 - 26939 (+)
Gene ID: HRGMv2_4055_7_23
Type: TC
Location: 26936 - 28729 (+)
Gene ID: HRGMv2_4055_7_24
Type:
Location: 28800 - 28925 (-)
Gene ID: HRGMv2_4055_7_25
Type: CAZyme
Location: 29061 - 30641 (+)
Gene ID: HRGMv2_4055_7_26
Type: pfam
Location: 30661 - 31716 (+)
Gene ID: HRGMv2_4055_7_27
Type: pfam
Location: 31759 - 31992 (+)
Gene ID: HRGMv2_4055_7_28
Type: TC
Location: 32520 - 33221 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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