Cluster: HRGMv2_4055_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4055
- CGC Family ID: CGCFAM_00037
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4055_62 | HRGMv2_4055_62_3 | 4477 | 6723 | - | GT35 |
| TC | HRGMv2_4055_62 | HRGMv2_4055_62_4 | 6735 | 7589 | - | 3.A.1.1.27 |
| TC | HRGMv2_4055_62 | HRGMv2_4055_62_5 | 7586 | 8947 | - | 3.A.1.1.27 |
| pfam | HRGMv2_4055_62 | HRGMv2_4055_62_6 | 8966 | 10435 | - | SBP_bac_1 | SBP_bac_8 |
| CAZyme | HRGMv2_4055_62 | HRGMv2_4055_62_7 | 10432 | 12108 | - | CBM34 | GH13_20 |
Gene ID: HRGMv2_4055_62_3
Type: CAZyme
Location: 4477 - 6723 (-)
Type: CAZyme
Location: 4477 - 6723 (-)
Gene ID: HRGMv2_4055_62_4
Type: TC
Location: 6735 - 7589 (-)
Type: TC
Location: 6735 - 7589 (-)
Gene ID: HRGMv2_4055_62_5
Type: TC
Location: 7586 - 8947 (-)
Type: TC
Location: 7586 - 8947 (-)
Gene ID: HRGMv2_4055_62_6
Type: pfam
Location: 8966 - 10435 (-)
Type: pfam
Location: 8966 - 10435 (-)
Gene ID: HRGMv2_4055_62_7
Type: CAZyme
Location: 10432 - 12108 (-)
Type: CAZyme
Location: 10432 - 12108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp944328845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.