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Cluster: HRGMv2_4054_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4054_13 HRGMv2_4054_13_20 25049 26089 + 3.A.1.34.1
TC HRGMv2_4054_13 HRGMv2_4054_13_21 26082 26855 + 3.A.1.34.1
TF HRGMv2_4054_13 HRGMv2_4054_13_22 27069 27302 - HTH_3
CAZyme HRGMv2_4054_13 HRGMv2_4054_13_23 27449 28708 + GT28
pfam HRGMv2_4054_13 HRGMv2_4054_13_24 28845 32372 - POR | POR_N | TPP_enzyme_C | EKR | Fer4_7 | Fer4_16 | PFOR_II
TC HRGMv2_4054_13 HRGMv2_4054_13_25 32599 33507 + 3.A.1.26.7
TC HRGMv2_4054_13 HRGMv2_4054_13_26 33483 34406 + 3.A.1.26.7
TC HRGMv2_4054_13 HRGMv2_4054_13_27 34396 35256 + 3.A.1.26.7
Gene ID: HRGMv2_4054_13_20
Type: TC
Location: 25049 - 26089 (+)
Gene ID: HRGMv2_4054_13_21
Type: TC
Location: 26082 - 26855 (+)
Gene ID: HRGMv2_4054_13_22
Type: TF
Location: 27069 - 27302 (-)
Gene ID: HRGMv2_4054_13_23
Type: CAZyme
Location: 27449 - 28708 (+)
Gene ID: HRGMv2_4054_13_24
Type: pfam
Location: 28845 - 32372 (-)
Gene ID: HRGMv2_4054_13_25
Type: TC
Location: 32599 - 33507 (+)
Gene ID: HRGMv2_4054_13_26
Type: TC
Location: 33483 - 34406 (+)
Gene ID: HRGMv2_4054_13_27
Type: TC
Location: 34396 - 35256 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4054_13_25 vegetarian > vegan 1.70831 0.00229

🧭 Explore Read Mapping of CGC

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