Cluster: HRGMv2_4054_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4054
- CGC Family ID: CGCFAM_03480
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4054_13 | HRGMv2_4054_13_6 | 4168 | 5580 | + | GH16 |
| TC | HRGMv2_4054_13 | HRGMv2_4054_13_7 | 5600 | 6691 | + | 3.A.1.1.6 |
| TC | HRGMv2_4054_13 | HRGMv2_4054_13_8 | 6702 | 7631 | + | 3.A.1.1.18 |
| NULL(UNKNOWN) | HRGMv2_4054_13 | HRGMv2_4054_13_9 | 7663 | 9318 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4054_13 | HRGMv2_4054_13_10 | 9420 | 10832 | + | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_4054_13 | HRGMv2_4054_13_11 | 10863 | 13373 | + | GH94 |
Gene ID: HRGMv2_4054_13_6
Type: CAZyme
Location: 4168 - 5580 (+)
Type: CAZyme
Location: 4168 - 5580 (+)
Gene ID: HRGMv2_4054_13_7
Type: TC
Location: 5600 - 6691 (+)
Type: TC
Location: 5600 - 6691 (+)
Gene ID: HRGMv2_4054_13_8
Type: TC
Location: 6702 - 7631 (+)
Type: TC
Location: 6702 - 7631 (+)
Gene ID: HRGMv2_4054_13_9
Type:
Location: 7663 - 9318 (+)
Type:
Location: 7663 - 9318 (+)
Gene ID: HRGMv2_4054_13_10
Type: pfam
Location: 9420 - 10832 (+)
Type: pfam
Location: 9420 - 10832 (+)
Gene ID: HRGMv2_4054_13_11
Type: CAZyme
Location: 10863 - 13373 (+)
Type: CAZyme
Location: 10863 - 13373 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp017886545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.