Cluster: HRGMv2_4054_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4054
- CGC Family ID: CGCFAM_00237
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4054_87 | HRGMv2_4054_87_2 | 1615 | 2907 | + | 3.D.10.1.4 |
| pfam | HRGMv2_4054_87 | HRGMv2_4054_87_3 | 2900 | 3763 | + | QRPTase_C | QRPTase_N |
| TF | HRGMv2_4054_87 | HRGMv2_4054_87_4 | 3784 | 4290 | + | HTH_11 |
| TC | HRGMv2_4054_87 | HRGMv2_4054_87_5 | 4657 | 7347 | + | 3.A.3.2.10 |
| CAZyme | HRGMv2_4054_87 | HRGMv2_4054_87_6 | 7449 | 9005 | - | GT2 |
Gene ID: HRGMv2_4054_87_2
Type: TC
Location: 1615 - 2907 (+)
Type: TC
Location: 1615 - 2907 (+)
Gene ID: HRGMv2_4054_87_3
Type: pfam
Location: 2900 - 3763 (+)
Type: pfam
Location: 2900 - 3763 (+)
Gene ID: HRGMv2_4054_87_4
Type: TF
Location: 3784 - 4290 (+)
Type: TF
Location: 3784 - 4290 (+)
Gene ID: HRGMv2_4054_87_5
Type: TC
Location: 4657 - 7347 (+)
Type: TC
Location: 4657 - 7347 (+)
Gene ID: HRGMv2_4054_87_6
Type: CAZyme
Location: 7449 - 9005 (-)
Type: CAZyme
Location: 7449 - 9005 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp017886545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.