Cluster: HRGMv2_4054_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4054
- CGC Family ID: CGCFAM_03396
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4054_29 | HRGMv2_4054_29_3 | 3866 | 4996 | + | 2.A.45.2.6 |
| pfam | HRGMv2_4054_29 | HRGMv2_4054_29_4 | 5103 | 6005 | + | YitT_membrane | DUF2179 |
| CAZyme | HRGMv2_4054_29 | HRGMv2_4054_29_5 | 6247 | 8190 | + | GH42 |
| CAZyme | HRGMv2_4054_29 | HRGMv2_4054_29_6 | 8194 | 10209 | + | GH3 |
Gene ID: HRGMv2_4054_29_3
Type: TC
Location: 3866 - 4996 (+)
Type: TC
Location: 3866 - 4996 (+)
Gene ID: HRGMv2_4054_29_4
Type: pfam
Location: 5103 - 6005 (+)
Type: pfam
Location: 5103 - 6005 (+)
Gene ID: HRGMv2_4054_29_5
Type: CAZyme
Location: 6247 - 8190 (+)
Type: CAZyme
Location: 6247 - 8190 (+)
Gene ID: HRGMv2_4054_29_6
Type: CAZyme
Location: 8194 - 10209 (+)
Type: CAZyme
Location: 8194 - 10209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp017886545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.