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Cluster: HRGMv2_4054_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4054_28 HRGMv2_4054_28_2 184 1482 - GH125
NULL(UNKNOWN) HRGMv2_4054_28 HRGMv2_4054_28_3 1486 4485 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4054_28 HRGMv2_4054_28_4 4529 5392 - 3.A.1.1.4
TC HRGMv2_4054_28 HRGMv2_4054_28_5 5396 6355 - 3.A.1.1.20
STP HRGMv2_4054_28 HRGMv2_4054_28_6 6371 7714 - SBP_bac_1
TF HRGMv2_4054_28 HRGMv2_4054_28_7 7944 9050 + GntR
CAZyme HRGMv2_4054_28 HRGMv2_4054_28_8 9329 12202 - GH106
CAZyme HRGMv2_4054_28 HRGMv2_4054_28_9 12199 13839 - GH78
CAZyme HRGMv2_4054_28 HRGMv2_4054_28_10 13856 16102 - GH94
Gene ID: HRGMv2_4054_28_2
Type: CAZyme
Location: 184 - 1482 (-)
Gene ID: HRGMv2_4054_28_3
Type:
Location: 1486 - 4485 (-)
Gene ID: HRGMv2_4054_28_4
Type: TC
Location: 4529 - 5392 (-)
Gene ID: HRGMv2_4054_28_5
Type: TC
Location: 5396 - 6355 (-)
Gene ID: HRGMv2_4054_28_6
Type: STP
Location: 6371 - 7714 (-)
Gene ID: HRGMv2_4054_28_7
Type: TF
Location: 7944 - 9050 (+)
Gene ID: HRGMv2_4054_28_8
Type: CAZyme
Location: 9329 - 12202 (-)
Gene ID: HRGMv2_4054_28_9
Type: CAZyme
Location: 12199 - 13839 (-)
Gene ID: HRGMv2_4054_28_10
Type: CAZyme
Location: 13856 - 16102 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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