Cluster: HRGMv2_4054_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4054
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4054_24 | HRGMv2_4054_24_12 | 11286 | 12203 | + | 3.A.1.1.11 |
| TC | HRGMv2_4054_24 | HRGMv2_4054_24_13 | 12193 | 13062 | + | 3.A.1.1.36 |
| pfam | HRGMv2_4054_24 | HRGMv2_4054_24_14 | 13084 | 15504 | + | DUF1349 | DUF5060 |
| CAZyme | HRGMv2_4054_24 | HRGMv2_4054_24_15 | 15515 | 17935 | + | GH116 |
Gene ID: HRGMv2_4054_24_12
Type: TC
Location: 11286 - 12203 (+)
Type: TC
Location: 11286 - 12203 (+)
Gene ID: HRGMv2_4054_24_13
Type: TC
Location: 12193 - 13062 (+)
Type: TC
Location: 12193 - 13062 (+)
Gene ID: HRGMv2_4054_24_14
Type: pfam
Location: 13084 - 15504 (+)
Type: pfam
Location: 13084 - 15504 (+)
Gene ID: HRGMv2_4054_24_15
Type: CAZyme
Location: 15515 - 17935 (+)
Type: CAZyme
Location: 15515 - 17935 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp017886545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.