Cluster: HRGMv2_4047_CGC21
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4047
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4047_20 | HRGMv2_4047_20_3 | 767 | 2440 | + | 9.B.33.1.1 |
| TF | HRGMv2_4047_20 | HRGMv2_4047_20_4 | 2444 | 3598 | + | HTH_AraC |
| TC | HRGMv2_4047_20 | HRGMv2_4047_20_5 | 3766 | 5424 | + | 3.A.1.1.10 |
| TC | HRGMv2_4047_20 | HRGMv2_4047_20_6 | 5427 | 6374 | + | 3.A.1.1.9 |
| TC | HRGMv2_4047_20 | HRGMv2_4047_20_7 | 6386 | 7285 | + | 3.A.1.1.9 |
| pfam | HRGMv2_4047_20 | HRGMv2_4047_20_8 | 7289 | 8998 | + | Bmp |
| pfam | HRGMv2_4047_20 | HRGMv2_4047_20_9 | 9036 | 10574 | + | Big_2 |
| CAZyme | HRGMv2_4047_20 | HRGMv2_4047_20_10 | 10637 | 11815 | + | GH37 |
| CAZyme | HRGMv2_4047_20 | HRGMv2_4047_20_11 | 11796 | 13775 | + | GH3 |
| CAZyme | HRGMv2_4047_20 | HRGMv2_4047_20_12 | 13784 | 15301 | + | GH31_19 |
Gene ID: HRGMv2_4047_20_3
Type: TC
Location: 767 - 2440 (+)
Type: TC
Location: 767 - 2440 (+)
Gene ID: HRGMv2_4047_20_4
Type: TF
Location: 2444 - 3598 (+)
Type: TF
Location: 2444 - 3598 (+)
Gene ID: HRGMv2_4047_20_5
Type: TC
Location: 3766 - 5424 (+)
Type: TC
Location: 3766 - 5424 (+)
Gene ID: HRGMv2_4047_20_6
Type: TC
Location: 5427 - 6374 (+)
Type: TC
Location: 5427 - 6374 (+)
Gene ID: HRGMv2_4047_20_7
Type: TC
Location: 6386 - 7285 (+)
Type: TC
Location: 6386 - 7285 (+)
Gene ID: HRGMv2_4047_20_8
Type: pfam
Location: 7289 - 8998 (+)
Type: pfam
Location: 7289 - 8998 (+)
Gene ID: HRGMv2_4047_20_9
Type: pfam
Location: 9036 - 10574 (+)
Type: pfam
Location: 9036 - 10574 (+)
Gene ID: HRGMv2_4047_20_10
Type: CAZyme
Location: 10637 - 11815 (+)
Type: CAZyme
Location: 10637 - 11815 (+)
Gene ID: HRGMv2_4047_20_11
Type: CAZyme
Location: 11796 - 13775 (+)
Type: CAZyme
Location: 11796 - 13775 (+)
Gene ID: HRGMv2_4047_20_12
Type: CAZyme
Location: 13784 - 15301 (+)
Type: CAZyme
Location: 13784 - 15301 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
UMGS775
Species
UMGS775 sp944363555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4047_20_3 | vegetarian > omnivore | 1.64039 | 0.01232 |
| HRGMv2_4047_20_3 | vegetarian > vegan | 1.13044 | 0.00933 |
| HRGMv2_4047_20_4 | vegetarian > omnivore | 1.70655 | 0.01232 |
| HRGMv2_4047_20_4 | vegetarian > vegan | 1.76047 | 0.00933 |
| HRGMv2_4047_20_5 | vegetarian > omnivore | 1.48741 | 0.01232 |
| HRGMv2_4047_20_5 | vegetarian > vegan | 1.72366 | 0.00933 |
| HRGMv2_4047_20_6 | vegetarian > omnivore | 1.43760 | 0.01232 |
| HRGMv2_4047_20_6 | vegetarian > vegan | 1.54469 | 0.00933 |
| HRGMv2_4047_20_7 | vegetarian > omnivore | 1.69361 | 0.01232 |
| HRGMv2_4047_20_7 | vegetarian > vegan | 1.90671 | 0.00933 |
| HRGMv2_4047_20_8 | vegetarian > vegan | 1.74140 | 0.00933 |
| HRGMv2_4047_20_8 | vegetarian > omnivore | 1.70288 | 0.01232 |
| HRGMv2_4047_20_9 | vegetarian > vegan | 1.74782 | 0.00933 |
| HRGMv2_4047_20_9 | vegetarian > omnivore | 1.44817 | 0.01232 |
| HRGMv2_4047_20_10 | vegetarian > vegan | 1.74137 | 0.00933 |
| HRGMv2_4047_20_10 | vegetarian > omnivore | 1.46302 | 0.01232 |
| HRGMv2_4047_20_11 | vegetarian > vegan | 1.80419 | 0.00933 |
| HRGMv2_4047_20_11 | vegetarian > omnivore | 1.46548 | 0.01232 |
| HRGMv2_4047_20_12 | vegetarian > vegan | 2.01368 | 0.00933 |
| HRGMv2_4047_20_12 | vegetarian > omnivore | 1.61912 | 0.01232 |