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Cluster: HRGMv2_4047_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4047_6 HRGMv2_4047_6_6 7109 9244 + GH78
pfam HRGMv2_4047_6 HRGMv2_4047_6_7 9377 10477 + Collagen
NULL(UNKNOWN) HRGMv2_4047_6 HRGMv2_4047_6_8 10714 11253 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4047_6 HRGMv2_4047_6_9 12221 13408 + 3.A.1.4.10
TC HRGMv2_4047_6 HRGMv2_4047_6_10 13544 14437 + 3.A.1.4.1
TC HRGMv2_4047_6 HRGMv2_4047_6_11 14449 15582 + 3.A.1.4.8
TC HRGMv2_4047_6 HRGMv2_4047_6_12 15584 16342 + 3.A.1.4.10
TC HRGMv2_4047_6 HRGMv2_4047_6_13 16353 17063 + 3.A.1.4.10
Gene ID: HRGMv2_4047_6_6
Type: CAZyme
Location: 7109 - 9244 (+)
Gene ID: HRGMv2_4047_6_7
Type: pfam
Location: 9377 - 10477 (+)
Gene ID: HRGMv2_4047_6_8
Type:
Location: 10714 - 11253 (+)
Gene ID: HRGMv2_4047_6_9
Type: TC
Location: 12221 - 13408 (+)
Gene ID: HRGMv2_4047_6_10
Type: TC
Location: 13544 - 14437 (+)
Gene ID: HRGMv2_4047_6_11
Type: TC
Location: 14449 - 15582 (+)
Gene ID: HRGMv2_4047_6_12
Type: TC
Location: 15584 - 16342 (+)
Gene ID: HRGMv2_4047_6_13
Type: TC
Location: 16353 - 17063 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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