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Cluster: HRGMv2_4046_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4046_10 HRGMv2_4046_10_52 51350 52264 - 3.A.1.1.18
NULL(UNKNOWN) HRGMv2_4046_10 HRGMv2_4046_10_53 52275 53297 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4046_10 HRGMv2_4046_10_54 53517 54437 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4046_10 HRGMv2_4046_10_55 54550 56661 - GH36
CAZyme HRGMv2_4046_10 HRGMv2_4046_10_56 56713 59721 - GH38
NULL(UNKNOWN) HRGMv2_4046_10 HRGMv2_4046_10_57 59846 60091 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4046_10 HRGMv2_4046_10_58 60072 61130 - 3.A.1.5.20
TC HRGMv2_4046_10 HRGMv2_4046_10_59 61140 62306 - 3.A.1.5.20
TC HRGMv2_4046_10 HRGMv2_4046_10_60 62310 63470 - 3.A.1.5.20
TC HRGMv2_4046_10 HRGMv2_4046_10_61 63482 64570 - 3.A.1.5.20
Gene ID: HRGMv2_4046_10_52
Type: TC
Location: 51350 - 52264 (-)
Gene ID: HRGMv2_4046_10_53
Type:
Location: 52275 - 53297 (-)
Gene ID: HRGMv2_4046_10_54
Type: TF
Location: 53517 - 54437 (+)
Gene ID: HRGMv2_4046_10_55
Type: CAZyme
Location: 54550 - 56661 (-)
Gene ID: HRGMv2_4046_10_56
Type: CAZyme
Location: 56713 - 59721 (-)
Gene ID: HRGMv2_4046_10_57
Type:
Location: 59846 - 60091 (-)
Gene ID: HRGMv2_4046_10_58
Type: TC
Location: 60072 - 61130 (-)
Gene ID: HRGMv2_4046_10_59
Type: TC
Location: 61140 - 62306 (-)
Gene ID: HRGMv2_4046_10_60
Type: TC
Location: 62310 - 63470 (-)
Gene ID: HRGMv2_4046_10_61
Type: TC
Location: 63482 - 64570 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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