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Cluster: HRGMv2_4046_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4046_59 HRGMv2_4046_59_3 2189 3706 - GH31_19
CAZyme HRGMv2_4046_59 HRGMv2_4046_59_4 3715 5694 - GH3
CAZyme HRGMv2_4046_59 HRGMv2_4046_59_5 5675 6853 - GH37
pfam HRGMv2_4046_59 HRGMv2_4046_59_6 6916 8433 - Big_2
pfam HRGMv2_4046_59 HRGMv2_4046_59_7 8472 10181 - Bmp
TC HRGMv2_4046_59 HRGMv2_4046_59_8 10184 11083 - 3.A.1.1.9
TC HRGMv2_4046_59 HRGMv2_4046_59_9 11095 12069 - 3.A.1.1.9
Gene ID: HRGMv2_4046_59_3
Type: CAZyme
Location: 2189 - 3706 (-)
Gene ID: HRGMv2_4046_59_4
Type: CAZyme
Location: 3715 - 5694 (-)
Gene ID: HRGMv2_4046_59_5
Type: CAZyme
Location: 5675 - 6853 (-)
Gene ID: HRGMv2_4046_59_6
Type: pfam
Location: 6916 - 8433 (-)
Gene ID: HRGMv2_4046_59_7
Type: pfam
Location: 8472 - 10181 (-)
Gene ID: HRGMv2_4046_59_8
Type: TC
Location: 10184 - 11083 (-)
Gene ID: HRGMv2_4046_59_9
Type: TC
Location: 11095 - 12069 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4046_59_3 vegetarian > omnivore 1.01853 0.00842
HRGMv2_4046_59_7 vegetarian > omnivore 1.17164 0.00842
HRGMv2_4046_59_9 vegetarian > omnivore 1.04519 0.00842

🧭 Explore Read Mapping of CGC

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