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Cluster: HRGMv2_4046_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4046_2 HRGMv2_4046_2_19 37447 38865 - GH142
pfam HRGMv2_4046_2 HRGMv2_4046_2_20 38945 42238 - Flg_new | Flg_new | Flg_new
CAZyme HRGMv2_4046_2 HRGMv2_4046_2_21 42261 44243 - GH163
NULL(UNKNOWN) HRGMv2_4046_2 HRGMv2_4046_2_22 44252 47485 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4046_2 HRGMv2_4046_2_23 47513 48415 - 3.A.1.1.1
pfam HRGMv2_4046_2 HRGMv2_4046_2_24 48408 49331 - BPD_transp_1
STP HRGMv2_4046_2 HRGMv2_4046_2_25 49333 50949 - SBP_bac_1
CAZyme HRGMv2_4046_2 HRGMv2_4046_2_26 50961 53015 - GH36
Gene ID: HRGMv2_4046_2_19
Type: CAZyme
Location: 37447 - 38865 (-)
Gene ID: HRGMv2_4046_2_20
Type: pfam
Location: 38945 - 42238 (-)
Gene ID: HRGMv2_4046_2_21
Type: CAZyme
Location: 42261 - 44243 (-)
Gene ID: HRGMv2_4046_2_22
Type:
Location: 44252 - 47485 (-)
Gene ID: HRGMv2_4046_2_23
Type: TC
Location: 47513 - 48415 (-)
Gene ID: HRGMv2_4046_2_24
Type: pfam
Location: 48408 - 49331 (-)
Gene ID: HRGMv2_4046_2_25
Type: STP
Location: 49333 - 50949 (-)
Gene ID: HRGMv2_4046_2_26
Type: CAZyme
Location: 50961 - 53015 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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