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Cluster: HRGMv2_4046_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4046_36 HRGMv2_4046_36_1 3 3146 + 8.A.43.1.3
TC HRGMv2_4046_36 HRGMv2_4046_36_2 3361 4149 + 2.A.5.5.2
STP HRGMv2_4046_36 HRGMv2_4046_36_3 4228 5913 + Pyr_redox_2 | Rhodanese
pfam HRGMv2_4046_36 HRGMv2_4046_36_4 5919 6449 + Isochorismatase
TC HRGMv2_4046_36 HRGMv2_4046_36_5 6877 8979 + 9.B.18.2.1
pfam HRGMv2_4046_36 HRGMv2_4046_36_6 9000 10163 + DegT_DnrJ_EryC1
TC HRGMv2_4046_36 HRGMv2_4046_36_7 10231 10926 + 9.B.18.1.2
pfam HRGMv2_4046_36 HRGMv2_4046_36_8 11037 11648 + Hexapep | PglD_N
CAZyme HRGMv2_4046_36 HRGMv2_4046_36_9 11645 12745 + GT4
CAZyme HRGMv2_4046_36 HRGMv2_4046_36_10 12802 13896 + GT4
Gene ID: HRGMv2_4046_36_1
Type: TC
Location: 3 - 3146 (+)
Gene ID: HRGMv2_4046_36_2
Type: TC
Location: 3361 - 4149 (+)
Gene ID: HRGMv2_4046_36_3
Type: STP
Location: 4228 - 5913 (+)
Gene ID: HRGMv2_4046_36_4
Type: pfam
Location: 5919 - 6449 (+)
Gene ID: HRGMv2_4046_36_5
Type: TC
Location: 6877 - 8979 (+)
Gene ID: HRGMv2_4046_36_6
Type: pfam
Location: 9000 - 10163 (+)
Gene ID: HRGMv2_4046_36_7
Type: TC
Location: 10231 - 10926 (+)
Gene ID: HRGMv2_4046_36_8
Type: pfam
Location: 11037 - 11648 (+)
Gene ID: HRGMv2_4046_36_9
Type: CAZyme
Location: 11645 - 12745 (+)
Gene ID: HRGMv2_4046_36_10
Type: CAZyme
Location: 12802 - 13896 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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