Cluster: HRGMv2_4041_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4041
- CGC Family ID: CGCFAM_04356
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4041_5 | HRGMv2_4041_5_3 | 1792 | 3321 | + | GH2 |
| TC | HRGMv2_4041_5 | HRGMv2_4041_5_4 | 3266 | 3796 | + | 3.A.1.1.34 |
| TC | HRGMv2_4041_5 | HRGMv2_4041_5_5 | 3811 | 4641 | + | 3.A.1.1.23 |
| TC | HRGMv2_4041_5 | HRGMv2_4041_5_6 | 4878 | 5885 | + | 3.A.1.14.11 |
| TC | HRGMv2_4041_5 | HRGMv2_4041_5_7 | 5893 | 6873 | + | 3.A.1.14.11 |
| TC | HRGMv2_4041_5 | HRGMv2_4041_5_8 | 6866 | 7648 | + | 3.A.1.14.18 |
Gene ID: HRGMv2_4041_5_3
Type: CAZyme
Location: 1792 - 3321 (+)
Type: CAZyme
Location: 1792 - 3321 (+)
Gene ID: HRGMv2_4041_5_4
Type: TC
Location: 3266 - 3796 (+)
Type: TC
Location: 3266 - 3796 (+)
Gene ID: HRGMv2_4041_5_5
Type: TC
Location: 3811 - 4641 (+)
Type: TC
Location: 3811 - 4641 (+)
Gene ID: HRGMv2_4041_5_6
Type: TC
Location: 4878 - 5885 (+)
Type: TC
Location: 4878 - 5885 (+)
Gene ID: HRGMv2_4041_5_7
Type: TC
Location: 5893 - 6873 (+)
Type: TC
Location: 5893 - 6873 (+)
Gene ID: HRGMv2_4041_5_8
Type: TC
Location: 6866 - 7648 (+)
Type: TC
Location: 6866 - 7648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp944333375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.