Cluster: HRGMv2_4041_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4041
- CGC Family ID: CGCFAM_00021
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4041_51 | HRGMv2_4041_51_6 | 7606 | 10326 | - | GH3 |
| pfam | HRGMv2_4041_51 | HRGMv2_4041_51_7 | 10385 | 11323 | - | IU_nuc_hydro |
| TF | HRGMv2_4041_51 | HRGMv2_4041_51_8 | 11364 | 12380 | - | LacI |
| TC | HRGMv2_4041_51 | HRGMv2_4041_51_9 | 12666 | 13604 | + | 3.A.1.1.10 |
| TC | HRGMv2_4041_51 | HRGMv2_4041_51_10 | 13625 | 14551 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_4041_51_6
Type: CAZyme
Location: 7606 - 10326 (-)
Type: CAZyme
Location: 7606 - 10326 (-)
Gene ID: HRGMv2_4041_51_7
Type: pfam
Location: 10385 - 11323 (-)
Type: pfam
Location: 10385 - 11323 (-)
Gene ID: HRGMv2_4041_51_8
Type: TF
Location: 11364 - 12380 (-)
Type: TF
Location: 11364 - 12380 (-)
Gene ID: HRGMv2_4041_51_9
Type: TC
Location: 12666 - 13604 (+)
Type: TC
Location: 12666 - 13604 (+)
Gene ID: HRGMv2_4041_51_10
Type: TC
Location: 13625 - 14551 (+)
Type: TC
Location: 13625 - 14551 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp944333375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.