Cluster: HRGMv2_4041_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4041
- CGC Family ID: CGCFAM_06991
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4041_37 | HRGMv2_4041_37_11 | 9283 | 10383 | - | 2.A.86.1.9 |
| pfam | HRGMv2_4041_37 | HRGMv2_4041_37_12 | 10417 | 10965 | - | Adenine_glyco |
| TC | HRGMv2_4041_37 | HRGMv2_4041_37_13 | 10955 | 12106 | - | 2.A.86.1.3 |
| pfam | HRGMv2_4041_37 | HRGMv2_4041_37_14 | 12118 | 12951 | - | TPM_phosphatase |
| NULL(UNKNOWN) | HRGMv2_4041_37 | HRGMv2_4041_37_15 | 12965 | 14002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4041_37 | HRGMv2_4041_37_16 | 14193 | 15350 | + | GH179 |
Gene ID: HRGMv2_4041_37_11
Type: TC
Location: 9283 - 10383 (-)
Type: TC
Location: 9283 - 10383 (-)
Gene ID: HRGMv2_4041_37_12
Type: pfam
Location: 10417 - 10965 (-)
Type: pfam
Location: 10417 - 10965 (-)
Gene ID: HRGMv2_4041_37_13
Type: TC
Location: 10955 - 12106 (-)
Type: TC
Location: 10955 - 12106 (-)
Gene ID: HRGMv2_4041_37_14
Type: pfam
Location: 12118 - 12951 (-)
Type: pfam
Location: 12118 - 12951 (-)
Gene ID: HRGMv2_4041_37_15
Type:
Location: 12965 - 14002 (-)
Type:
Location: 12965 - 14002 (-)
Gene ID: HRGMv2_4041_37_16
Type: CAZyme
Location: 14193 - 15350 (+)
Type: CAZyme
Location: 14193 - 15350 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp944333375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4041_37_16 | vegetarian > vegan | 2.38492 | 0.03183 |