Cluster: HRGMv2_4041_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4041
- CGC Family ID: CGCFAM_01139
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4041_31 | HRGMv2_4041_31_4 | 2887 | 4302 | - | 2.A.66.1.28 |
| pfam | HRGMv2_4041_31 | HRGMv2_4041_31_5 | 4524 | 5930 | - | NosD | NosD | DUF1565 | Beta_helix | Beta_helix |
| CAZyme | HRGMv2_4041_31 | HRGMv2_4041_31_6 | 6038 | 6703 | - | CBM9 |
| CAZyme | HRGMv2_4041_31 | HRGMv2_4041_31_7 | 6914 | 9349 | - | GH3 |
| TF | HRGMv2_4041_31 | HRGMv2_4041_31_8 | 9839 | 11314 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4041_31 | HRGMv2_4041_31_9 | 11392 | 12507 | - | 3.A.1.1.16 |
| CAZyme | HRGMv2_4041_31 | HRGMv2_4041_31_10 | 12589 | 14472 | - | GH3 |
| TC | HRGMv2_4041_31 | HRGMv2_4041_31_11 | 14490 | 15383 | - | 3.A.1.1.24 |
| TC | HRGMv2_4041_31 | HRGMv2_4041_31_12 | 15388 | 16419 | - | 3.A.1.1.30 |
| CAZyme | HRGMv2_4041_31 | HRGMv2_4041_31_13 | 16547 | 18529 | - | GH3 |
| STP | HRGMv2_4041_31 | HRGMv2_4041_31_14 | 18519 | 19886 | - | SBP_bac_1 |
| pfam | HRGMv2_4041_31 | HRGMv2_4041_31_15 | 19906 | 20718 | - | CBM9_1 |
| TC | HRGMv2_4041_31 | HRGMv2_4041_31_16 | 20991 | 22796 | + | 8.A.59.2.1 |
Gene ID: HRGMv2_4041_31_4
Type: TC
Location: 2887 - 4302 (-)
Type: TC
Location: 2887 - 4302 (-)
Gene ID: HRGMv2_4041_31_5
Type: pfam
Location: 4524 - 5930 (-)
Type: pfam
Location: 4524 - 5930 (-)
Gene ID: HRGMv2_4041_31_6
Type: CAZyme
Location: 6038 - 6703 (-)
Type: CAZyme
Location: 6038 - 6703 (-)
Gene ID: HRGMv2_4041_31_7
Type: CAZyme
Location: 6914 - 9349 (-)
Type: CAZyme
Location: 6914 - 9349 (-)
Gene ID: HRGMv2_4041_31_8
Type: TF
Location: 9839 - 11314 (+)
Type: TF
Location: 9839 - 11314 (+)
Gene ID: HRGMv2_4041_31_9
Type: TC
Location: 11392 - 12507 (-)
Type: TC
Location: 11392 - 12507 (-)
Gene ID: HRGMv2_4041_31_10
Type: CAZyme
Location: 12589 - 14472 (-)
Type: CAZyme
Location: 12589 - 14472 (-)
Gene ID: HRGMv2_4041_31_11
Type: TC
Location: 14490 - 15383 (-)
Type: TC
Location: 14490 - 15383 (-)
Gene ID: HRGMv2_4041_31_12
Type: TC
Location: 15388 - 16419 (-)
Type: TC
Location: 15388 - 16419 (-)
Gene ID: HRGMv2_4041_31_13
Type: CAZyme
Location: 16547 - 18529 (-)
Type: CAZyme
Location: 16547 - 18529 (-)
Gene ID: HRGMv2_4041_31_14
Type: STP
Location: 18519 - 19886 (-)
Type: STP
Location: 18519 - 19886 (-)
Gene ID: HRGMv2_4041_31_15
Type: pfam
Location: 19906 - 20718 (-)
Type: pfam
Location: 19906 - 20718 (-)
Gene ID: HRGMv2_4041_31_16
Type: TC
Location: 20991 - 22796 (+)
Type: TC
Location: 20991 - 22796 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp944333375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.