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Cluster: HRGMv2_4041_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4041_14 HRGMv2_4041_14_9 6654 7226 + 3.A.1.17.3
pfam HRGMv2_4041_14 HRGMv2_4041_14_10 7319 9916 - PG_binding_1 | PG_binding_1 | PG_binding_1 | PG_binding_1 | PG_binding_1 | PG_binding_1 | SH3_3 | SH3_3 | PG_binding_2
pfam HRGMv2_4041_14 HRGMv2_4041_14_11 10128 11171 + PGA_cap
CAZyme HRGMv2_4041_14 HRGMv2_4041_14_12 11310 12824 + GH13_5
pfam HRGMv2_4041_14 HRGMv2_4041_14_13 12866 13810 + ROK
STP HRGMv2_4041_14 HRGMv2_4041_14_14 13825 14487 + SIS
TC HRGMv2_4041_14 HRGMv2_4041_14_15 14631 16142 + 3.A.1.2.13
TC HRGMv2_4041_14 HRGMv2_4041_14_16 16163 17212 + 3.A.1.2.11
TC HRGMv2_4041_14 HRGMv2_4041_14_17 17233 18135 + 3.A.1.2.13
Gene ID: HRGMv2_4041_14_9
Type: TC
Location: 6654 - 7226 (+)
Gene ID: HRGMv2_4041_14_10
Type: pfam
Location: 7319 - 9916 (-)
Gene ID: HRGMv2_4041_14_11
Type: pfam
Location: 10128 - 11171 (+)
Gene ID: HRGMv2_4041_14_12
Type: CAZyme
Location: 11310 - 12824 (+)
Gene ID: HRGMv2_4041_14_13
Type: pfam
Location: 12866 - 13810 (+)
Gene ID: HRGMv2_4041_14_14
Type: STP
Location: 13825 - 14487 (+)
Gene ID: HRGMv2_4041_14_15
Type: TC
Location: 14631 - 16142 (+)
Gene ID: HRGMv2_4041_14_16
Type: TC
Location: 16163 - 17212 (+)
Gene ID: HRGMv2_4041_14_17
Type: TC
Location: 17233 - 18135 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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