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Cluster: HRGMv2_4034_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4034_2 HRGMv2_4034_2_83 87801 89762 - 9.B.14.1.7
pfam HRGMv2_4034_2 HRGMv2_4034_2_84 89856 90332 - CcmE
pfam HRGMv2_4034_2 HRGMv2_4034_2_85 90357 90542 - CcmD
TC HRGMv2_4034_2 HRGMv2_4034_2_86 90539 91264 - 9.B.14.2.4
TC HRGMv2_4034_2 HRGMv2_4034_2_87 91313 91981 - 3.A.1.107.4
TC HRGMv2_4034_2 HRGMv2_4034_2_88 92027 92737 - 3.A.1.107.3
NULL(UNKNOWN) HRGMv2_4034_2 HRGMv2_4034_2_89 92988 93392 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4034_2 HRGMv2_4034_2_90 93471 94400 - 2.A.7.17.1
pfam HRGMv2_4034_2 HRGMv2_4034_2_91 94771 96759 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH
TC HRGMv2_4034_2 HRGMv2_4034_2_92 96804 97403 + 4.F.1.1.8
CAZyme HRGMv2_4034_2 HRGMv2_4034_2_93 97400 98512 + GT104
Gene ID: HRGMv2_4034_2_83
Type: TC
Location: 87801 - 89762 (-)
Gene ID: HRGMv2_4034_2_84
Type: pfam
Location: 89856 - 90332 (-)
Gene ID: HRGMv2_4034_2_85
Type: pfam
Location: 90357 - 90542 (-)
Gene ID: HRGMv2_4034_2_86
Type: TC
Location: 90539 - 91264 (-)
Gene ID: HRGMv2_4034_2_87
Type: TC
Location: 91313 - 91981 (-)
Gene ID: HRGMv2_4034_2_88
Type: TC
Location: 92027 - 92737 (-)
Gene ID: HRGMv2_4034_2_89
Type:
Location: 92988 - 93392 (+)
Gene ID: HRGMv2_4034_2_90
Type: TC
Location: 93471 - 94400 (-)
Gene ID: HRGMv2_4034_2_91
Type: pfam
Location: 94771 - 96759 (+)
Gene ID: HRGMv2_4034_2_92
Type: TC
Location: 96804 - 97403 (+)
Gene ID: HRGMv2_4034_2_93
Type: CAZyme
Location: 97400 - 98512 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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