Cluster: HRGMv2_4031_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4031
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4031_52 | HRGMv2_4031_52_1 | 142 | 1356 | - | 2.A.27.1.1 |
| pfam | HRGMv2_4031_52 | HRGMv2_4031_52_2 | 1987 | 3405 | - | Gln-synt_C | Gln-synt_N |
| pfam | HRGMv2_4031_52 | HRGMv2_4031_52_3 | 3895 | 4713 | + | Shikimate_DH | Shikimate_dh_N | SDH_C |
| CAZyme | HRGMv2_4031_52 | HRGMv2_4031_52_4 | 4706 | 5392 | + | GT51 |
Gene ID: HRGMv2_4031_52_1
Type: TC
Location: 142 - 1356 (-)
Type: TC
Location: 142 - 1356 (-)
Gene ID: HRGMv2_4031_52_2
Type: pfam
Location: 1987 - 3405 (-)
Type: pfam
Location: 1987 - 3405 (-)
Gene ID: HRGMv2_4031_52_3
Type: pfam
Location: 3895 - 4713 (+)
Type: pfam
Location: 3895 - 4713 (+)
Gene ID: HRGMv2_4031_52_4
Type: CAZyme
Location: 4706 - 5392 (+)
Type: CAZyme
Location: 4706 - 5392 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Neisseriaceae
Genus
Neisseria
Species
Neisseria suis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.