Cluster: HRGMv2_4031_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4031
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4031_138 | HRGMv2_4031_138_1 | 479 | 1273 | - | 3.A.1.34.1 |
| TC | HRGMv2_4031_138 | HRGMv2_4031_138_2 | 1270 | 2172 | - | 3.A.1.34.1 |
| pfam | HRGMv2_4031_138 | HRGMv2_4031_138_3 | 2359 | 3378 | - | ABC_sub_bind |
| CAZyme | HRGMv2_4031_138 | HRGMv2_4031_138_4 | 3674 | 4150 | - | CBM50 |
| pfam | HRGMv2_4031_138 | HRGMv2_4031_138_5 | 4215 | 5000 | + | DsbD_2 |
| pfam | HRGMv2_4031_138 | HRGMv2_4031_138_6 | 5456 | 5779 | - | YbjQ_1 |
| TC | HRGMv2_4031_138 | HRGMv2_4031_138_7 | 5884 | 6681 | - | 2.A.102.4.3 |
Gene ID: HRGMv2_4031_138_1
Type: TC
Location: 479 - 1273 (-)
Type: TC
Location: 479 - 1273 (-)
Gene ID: HRGMv2_4031_138_2
Type: TC
Location: 1270 - 2172 (-)
Type: TC
Location: 1270 - 2172 (-)
Gene ID: HRGMv2_4031_138_3
Type: pfam
Location: 2359 - 3378 (-)
Type: pfam
Location: 2359 - 3378 (-)
Gene ID: HRGMv2_4031_138_4
Type: CAZyme
Location: 3674 - 4150 (-)
Type: CAZyme
Location: 3674 - 4150 (-)
Gene ID: HRGMv2_4031_138_5
Type: pfam
Location: 4215 - 5000 (+)
Type: pfam
Location: 4215 - 5000 (+)
Gene ID: HRGMv2_4031_138_6
Type: pfam
Location: 5456 - 5779 (-)
Type: pfam
Location: 5456 - 5779 (-)
Gene ID: HRGMv2_4031_138_7
Type: TC
Location: 5884 - 6681 (-)
Type: TC
Location: 5884 - 6681 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Neisseriaceae
Genus
Neisseria
Species
Neisseria suis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.