Cluster: HRGMv2_4030_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4030
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4030_199 | HRGMv2_4030_199_2 | 509 | 1687 | + | 9.B.146.1.6 |
| pfam | HRGMv2_4030_199 | HRGMv2_4030_199_3 | 1695 | 3143 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_4030_199 | HRGMv2_4030_199_4 | 3140 | 4399 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_4030_199 | HRGMv2_4030_199_5 | 4566 | 5492 | + | GT28 |
Gene ID: HRGMv2_4030_199_2
Type: TC
Location: 509 - 1687 (+)
Type: TC
Location: 509 - 1687 (+)
Gene ID: HRGMv2_4030_199_3
Type: pfam
Location: 1695 - 3143 (+)
Type: pfam
Location: 1695 - 3143 (+)
Gene ID: HRGMv2_4030_199_4
Type: TC
Location: 3140 - 4399 (+)
Type: TC
Location: 3140 - 4399 (+)
Gene ID: HRGMv2_4030_199_5
Type: CAZyme
Location: 4566 - 5492 (+)
Type: CAZyme
Location: 4566 - 5492 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ottowia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.