Cluster: HRGMv2_4030_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4030
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4030_119 | HRGMv2_4030_119_1 | 441 | 1502 | + | 2.A.7.3.63 |
| STP | HRGMv2_4030_119 | HRGMv2_4030_119_2 | 1522 | 2907 | - | HATPase_c | HisKA |
| TF | HRGMv2_4030_119 | HRGMv2_4030_119_3 | 2910 | 3596 | - | Trans_reg_C |
| CAZyme | HRGMv2_4030_119 | HRGMv2_4030_119_4 | 3710 | 5572 | + | AA1 |
| TC | HRGMv2_4030_119 | HRGMv2_4030_119_5 | 5569 | 6636 | + | 1.B.76.1.1 |
Gene ID: HRGMv2_4030_119_1
Type: TC
Location: 441 - 1502 (+)
Type: TC
Location: 441 - 1502 (+)
Gene ID: HRGMv2_4030_119_2
Type: STP
Location: 1522 - 2907 (-)
Type: STP
Location: 1522 - 2907 (-)
Gene ID: HRGMv2_4030_119_3
Type: TF
Location: 2910 - 3596 (-)
Type: TF
Location: 2910 - 3596 (-)
Gene ID: HRGMv2_4030_119_4
Type: CAZyme
Location: 3710 - 5572 (+)
Type: CAZyme
Location: 3710 - 5572 (+)
Gene ID: HRGMv2_4030_119_5
Type: TC
Location: 5569 - 6636 (+)
Type: TC
Location: 5569 - 6636 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ottowia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.