dbCAN Logo

Cluster: HRGMv2_4030_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4030_52 HRGMv2_4030_52_1 16 948 - GH103
pfam HRGMv2_4030_52 HRGMv2_4030_52_2 1157 3487 - malic | PTA_PTB | Malic_M
pfam HRGMv2_4030_52 HRGMv2_4030_52_3 3547 4131 - 5-FTHF_cyc-lig
CAZyme HRGMv2_4030_52 HRGMv2_4030_52_4 4255 6294 + GH23
pfam HRGMv2_4030_52 HRGMv2_4030_52_5 6385 7362 + 3Beta_HSD | Epimerase | Sacchrp_dh_NADP | NAD_binding_4 | NAD_binding_10
TC HRGMv2_4030_52 HRGMv2_4030_52_6 7603 8721 + 3.A.1.4.8
TC HRGMv2_4030_52 HRGMv2_4030_52_7 8835 9767 + 3.A.1.4.1
TC HRGMv2_4030_52 HRGMv2_4030_52_8 9767 11038 + 3.A.1.4.8
TC HRGMv2_4030_52 HRGMv2_4030_52_9 11040 11816 + 3.A.1.4.8
TC HRGMv2_4030_52 HRGMv2_4030_52_10 11816 12541 + 3.A.1.4.8
Gene ID: HRGMv2_4030_52_1
Type: CAZyme
Location: 16 - 948 (-)
Gene ID: HRGMv2_4030_52_2
Type: pfam
Location: 1157 - 3487 (-)
Gene ID: HRGMv2_4030_52_3
Type: pfam
Location: 3547 - 4131 (-)
Gene ID: HRGMv2_4030_52_4
Type: CAZyme
Location: 4255 - 6294 (+)
Gene ID: HRGMv2_4030_52_5
Type: pfam
Location: 6385 - 7362 (+)
Gene ID: HRGMv2_4030_52_6
Type: TC
Location: 7603 - 8721 (+)
Gene ID: HRGMv2_4030_52_7
Type: TC
Location: 8835 - 9767 (+)
Gene ID: HRGMv2_4030_52_8
Type: TC
Location: 9767 - 11038 (+)
Gene ID: HRGMv2_4030_52_9
Type: TC
Location: 11040 - 11816 (+)
Gene ID: HRGMv2_4030_52_10
Type: TC
Location: 11816 - 12541 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List