Cluster: HRGMv2_4030_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4030
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4030_2 | HRGMv2_4030_2_23 | 20323 | 21981 | + | 1.B.52.2.2 |
| STP | HRGMv2_4030_2 | HRGMv2_4030_2_24 | 22174 | 28095 | + | CheW | H-kinase_dim | HATPase_c | Response_reg |
| pfam | HRGMv2_4030_2 | HRGMv2_4030_2_25 | 28296 | 29126 | + | Cupin_3 | Cupin_2 | Cupin_2 |
| CAZyme | HRGMv2_4030_2 | HRGMv2_4030_2_26 | 29166 | 30101 | + | CE4 |
| pfam | HRGMv2_4030_2 | HRGMv2_4030_2_27 | 30127 | 30645 | + | Ureidogly_lyase |
| pfam | HRGMv2_4030_2 | HRGMv2_4030_2_28 | 30834 | 32471 | + | TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N |
| TC | HRGMv2_4030_2 | HRGMv2_4030_2_29 | 32562 | 33779 | - | 9.B.43.1.1 |
Gene ID: HRGMv2_4030_2_23
Type: TC
Location: 20323 - 21981 (+)
Type: TC
Location: 20323 - 21981 (+)
Gene ID: HRGMv2_4030_2_24
Type: STP
Location: 22174 - 28095 (+)
Type: STP
Location: 22174 - 28095 (+)
Gene ID: HRGMv2_4030_2_25
Type: pfam
Location: 28296 - 29126 (+)
Type: pfam
Location: 28296 - 29126 (+)
Gene ID: HRGMv2_4030_2_26
Type: CAZyme
Location: 29166 - 30101 (+)
Type: CAZyme
Location: 29166 - 30101 (+)
Gene ID: HRGMv2_4030_2_27
Type: pfam
Location: 30127 - 30645 (+)
Type: pfam
Location: 30127 - 30645 (+)
Gene ID: HRGMv2_4030_2_28
Type: pfam
Location: 30834 - 32471 (+)
Type: pfam
Location: 30834 - 32471 (+)
Gene ID: HRGMv2_4030_2_29
Type: TC
Location: 32562 - 33779 (-)
Type: TC
Location: 32562 - 33779 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ottowia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.