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Cluster: HRGMv2_4029_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4029_13 HRGMv2_4029_13_4 4674 4997 - 2.A.7.1.10
TC HRGMv2_4029_13 HRGMv2_4029_13_5 5124 6305 + 2.A.1.60.3
pfam HRGMv2_4029_13 HRGMv2_4029_13_6 6310 7212 - Hydrolase | Hydrolase_3 | HAD
pfam HRGMv2_4029_13 HRGMv2_4029_13_7 7287 8543 - Sugar_tr | MFS_1
CAZyme HRGMv2_4029_13 HRGMv2_4029_13_8 8598 9677 - GT9
pfam HRGMv2_4029_13 HRGMv2_4029_13_9 9683 11110 - PAP2
TC HRGMv2_4029_13 HRGMv2_4029_13_10 11460 12878 - 3.D.10.1.4
Gene ID: HRGMv2_4029_13_4
Type: TC
Location: 4674 - 4997 (-)
Gene ID: HRGMv2_4029_13_5
Type: TC
Location: 5124 - 6305 (+)
Gene ID: HRGMv2_4029_13_6
Type: pfam
Location: 6310 - 7212 (-)
Gene ID: HRGMv2_4029_13_7
Type: pfam
Location: 7287 - 8543 (-)
Gene ID: HRGMv2_4029_13_8
Type: CAZyme
Location: 8598 - 9677 (-)
Gene ID: HRGMv2_4029_13_9
Type: pfam
Location: 9683 - 11110 (-)
Gene ID: HRGMv2_4029_13_10
Type: TC
Location: 11460 - 12878 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4029_13_10 vegetarian > omnivore 1.25620 0.03728

🧭 Explore Read Mapping of CGC

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